RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 SMCR8Q8TEV9 937 aaPredicted RBP13.59□□□□□ -0.23
SHMT1-208ENST00000582352 FAM107BQ9H098 131 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 ANKRD65E5RJM6 399 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 PLEKP08567 350 aaPredicted RBP13.59□□□□□ -0.23
SHMT1-208ENST00000582352 OR52Z1P0C646 297 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 AMPD3Q01432 767 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 GRM4Q14833 912 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 TXNRD1Q16881 649 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 SKIDA1Q1XH10 827 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 CNNM4Q6P4Q7 775 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 DGKHQ86XP1 1220 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 C2CD5Q86YS7 1000 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 CREG2Q8IUH2 290 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 EFCAB13Q8IY85 973 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 LRRC15Q8TF66 581 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 MINPP1Q9UNW1 487 aa13.59□□□□□ -0.23
SHMT1-208ENST00000582352 ZNF263O14978 683 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 FCER1AP12319 257 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 KIF11P52732 1056 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 ITIH3Q06033 890 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 RUFY1Q96T51 708 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 BARHL2Q9NY43 387 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 PLAGL2Q9UPG8 496 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 MTMR7Q9Y216 660 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 PCDHA13Q9Y5I0 950 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 TAF1P21675 1872 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 MAST2Q6P0Q8 1798 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 STXBP3O00186 592 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 TCP1P17987 556 aaKnown RBP13.58□□□□□ -0.24
SHMT1-208ENST00000582352 PRDX5P30044 214 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 TMED8Q6PL24 325 aaPredicted RBP13.58□□□□□ -0.24
SHMT1-208ENST00000582352 ZNF572Q7Z3I7 529 aaPredicted RBP13.58□□□□□ -0.24
SHMT1-208ENST00000582352 SPATA4Q8NEY3 305 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 C7orf25Q9BPX7 421 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 HINFPQ9BQA5 517 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 MLXIPQ9HAP2 919 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 FAM207AQ9NSI2 230 aaPredicted RBP13.58□□□□□ -0.24
SHMT1-208ENST00000582352 HYOU1Q9Y4L1 999 aa13.58□□□□□ -0.24
SHMT1-208ENST00000582352 GOLGA8KD6RF30 607 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 AKR1B10O60218 316 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 CCNT1O60563 726 aaKnown RBP13.57□□□□□ -0.24
SHMT1-208ENST00000582352 MOCS3O95396 460 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 MATR3P43243 847 aaKnown RBP eCLIP13.57□□□□□ -0.24
SHMT1-208ENST00000582352 NOP2P46087 812 aaKnown RBP13.57□□□□□ -0.24
SHMT1-208ENST00000582352 PPFIA1Q13136 1202 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 LETM2Q2VYF4 491 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 GBP6Q6ZN66 633 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 OSBPL9Q96SU4 736 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 LRRC1Q9BTT6 524 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 MAD2L2Q9UI95 211 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 USP17L8P0C7I0 530 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 PRLRP16471 622 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 HNRNPH3P31942 346 aaKnown RBP13.57□□□□□ -0.24
SHMT1-208ENST00000582352 EPHB4P54760 987 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 EZH2Q15910 746 aaKnown RBP13.57□□□□□ -0.24
SHMT1-208ENST00000582352 ERFEQ4G0M1 354 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 C3orf67Q6ZVT6 689 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 FBXO33Q7Z6M2 555 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 PACS2Q86VP3 889 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 RRP36Q96EU6 259 aaKnown RBP13.57□□□□□ -0.24
SHMT1-208ENST00000582352 CAPS2Q9BXY5 557 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 IL17RBQ9NRM6 502 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 ARHGAP20Q9P2F6 1191 aa13.57□□□□□ -0.24
SHMT1-208ENST00000582352 OPA1O60313 960 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 KLRK1P26718 216 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 EIF4A3P38919 411 aaKnown RBP13.56□□□□□ -0.24
SHMT1-208ENST00000582352 VWA3BQ502W6 1294 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 NFRKBQ6P4R8 1299 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 DZIP1Q86YF9 867 aaKnown RBP13.56□□□□□ -0.24
SHMT1-208ENST00000582352 HDAC7Q8WUI4 952 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 PSMB7Q99436 277 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 MKNK2Q9HBH9 465 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 STIM2Q9P246 746 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 DMGDHQ9UI17 866 aaKnown RBP13.56□□□□□ -0.24
SHMT1-208ENST00000582352 CCDC88AQ3V6T2 1871 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 LOC102724428A0A0B4J2F2 783 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 TSPY3P0CV98 308 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 TSPY8P0CW00 308 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 PAFAH1B1P43034 410 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 CCT5P48643 541 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 NT5C2P49902 561 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 SIK1P57059 783 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 EMBQ6PCB8 327 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 KRT25Q7Z3Z0 450 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 CCDC84Q86UT8 332 aaPredicted RBP13.56□□□□□ -0.24
SHMT1-208ENST00000582352 KIAA0895Q8NCT3 520 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 IPO4Q8TEX9 1081 aaKnown RBP13.56□□□□□ -0.24
SHMT1-208ENST00000582352 CALML4Q96GE6 196 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 NDST4Q9H3R1 872 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 MMRN2Q9H8L6 949 aa13.56□□□□□ -0.24
SHMT1-208ENST00000582352 SHTN1A0MZ66 631 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 IRAK1P51617 712 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 NAPAP54920 295 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 SLC7A5Q01650 507 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 NONOQ15233 471 aaKnown RBP eCLIP13.55□□□□□ -0.24
SHMT1-208ENST00000582352 SF3B3Q15393 1217 aaKnown RBP13.55□□□□□ -0.24
SHMT1-208ENST00000582352 C8orf74Q6P047 294 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 TADA2BQ86TJ2 420 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 SLC39A2Q9NP94 309 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 MYH10P35580 1976 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms