RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	CCL23	P55773	120 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	NKX3-2	P78367	333 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ZNF543	Q08ER8	600 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	GRIN2C	Q14957	1233 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	USH1G	Q495M9	461 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CWC27	Q6UX04	472 aa	Known RBP	13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CHD1L	Q86WJ1	897 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PLEKHM2	Q8IWE5	1019 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	SMC5	Q8IY18	1101 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PPP1R13L	Q8WUF5	828 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CLEC4D	Q8WXI8	215 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TIFA	Q96CG3	184 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	WDR11	Q9BZH6	1224 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	UBA5	Q9GZZ9	404 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	HIPK3	Q9H422	1215 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	RWDD1	Q9H446	243 aa	Predicted RBP	13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ZNF213	O14771	459 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CABYR	O75952	493 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	MYL3	P08590	195 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	RNF207	Q6ZRF8	634 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	SLC43A3	Q8NBI5	491 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	EXOC6	Q8TAG9	804 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	MORC4	Q8TE76	937 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ESR2	Q92731	530 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ADD3	Q9UEY8	706 aa	Known RBP	13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	VCAN	P13611	3396 aa		13.66	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	KDM4A	O75164	1064 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	MFAP1	P55081	439 aa	Known RBP	13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	RPS6	P62753	249 aa	Known RBP	13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	NUCB1	Q02818	461 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PDE4D	Q08499	809 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	DUSP28	Q4G0W2	176 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	OR6J1	Q8NGC5	347 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	COPS5	Q92905	334 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PBX4	Q9BYU1	374 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	RNF41	Q9H4P4	317 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ZNF576	Q9H609	170 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	IL23A	Q9NPF7	189 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	DIAPH3	Q9NSV4	1193 aa		13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.65	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TMEM265	A0A087WTH1	108 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114		B4E1Z4	1266 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	SNHG28	P0DPA3	235 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	OTOP2	Q7RTS6	562 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	SCLY	Q96I15	445 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TTC14	Q96N46	770 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	NOC4L	Q9BVI4	516 aa	Known RBP	13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TRMT13	Q9NUP7	481 aa	Known RBP	13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114		Q9Y3F1	56 aa		13.64	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	LAMA4	Q16363	1823 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	FGB	P02675	491 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PC	P11498	1178 aa	Known RBP	13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CYP2C9	P11712	490 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CHMP4BP1	P59074	171 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PPP2R5B	Q15173	497 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CDC37	Q16543	378 aa	Predicted RBP	13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	RASIP1	Q5U651	963 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TICAM2	Q86XR7	235 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	USP38	Q8NB14	1042 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PNMA1	Q8ND90	353 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PPM1E	Q8WY54	764 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TBC1D5	Q92609	795 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	WNT8A	Q9H1J5	351 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	KAT14	Q9H8E8	782 aa		13.63	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CPT1A	P50416	773 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PURA	Q00577	322 aa	Known RBP	13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	FAM47C	Q5HY64	1035 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	GPATCH4	Q5T3I0	446 aa	Known RBP	13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	IQCA1	Q86XH1	822 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	DGKH	Q86XP1	1220 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	HERVK_113	Q902F9	699 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	NKX2-4	Q9H2Z4	354 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	OSBPL3	Q9H4L5	887 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PRDM12	Q9H4Q4	367 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	VAT1L	Q9HCJ6	419 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	GPHN	Q9NQX3	736 aa	Predicted RBP	13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	POLR3E	Q9NVU0	708 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TNKS	O95271	1327 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	WDR19	Q8NEZ3	1342 aa		13.62	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	CUL9	Q8IWT3	2517 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	RBM47	A0AV96	593 aa	Known RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ZBBX	A8MT70	800 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	DHX16	O60231	1041 aa	Known RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ARIH2	O95376	493 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	TXN	P10599	105 aa	Known RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	EDNRB	P24530	442 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	RABGGTB	P53611	331 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	AAMP	Q13685	434 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	NBPF20	Q3BBV1	942 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	DEFB128	Q7Z7B8	93 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ADGRF4	Q8IZF3	695 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ENAH	Q8N8S7	591 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	MPHOSPH6	Q99547	160 aa	Known RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	MTG1	Q9BT17	334 aa	Predicted RBP	13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	IL25	Q9H293	177 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	PRDM6	Q9NQX0	595 aa		13.61	□□□□□ -0.23
CDK5RAP3-223	ENST00000582114	ZSWIM5	Q9P217	1185 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms