RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SCAND2PQ9GZW5 306 aaPredicted RBP28.67■■■□□ 2.18
SHMT1-207ENST00000580002 EIF4ENIF1Q9NRA8 985 aaKnown RBP28.67■■■□□ 2.18
SHMT1-207ENST00000580002 RNF146Q9NTX7 359 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 COL20A1Q9P218 1284 aa28.67■■■□□ 2.18
SHMT1-207ENST00000580002 STK38Q15208 465 aa28.66■■■□□ 2.18
SHMT1-207ENST00000580002 GCOM1H8Y6P7 765 aaPredicted RBP28.65■■■□□ 2.18
SHMT1-207ENST00000580002 ATP2A1O14983 1001 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 POLR2MP0CAP2 368 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 MCM7P33993 719 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 FSTL1Q12841 308 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 SLC39A14Q15043 492 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 TEX13BQ9BXU2 312 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 ANO3Q9BYT9 981 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 NOL7Q9UMY1 257 aaKnown RBP28.65■■■□□ 2.18
SHMT1-207ENST00000580002 GOLGA6L22H0YM25 854 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 IGF2BP3O00425 579 aaKnown RBP eCLIP28.65■■■□□ 2.18
SHMT1-207ENST00000580002 OAZ1P54368 228 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 TRAF1Q13077 416 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 LETM2Q2VYF4 491 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 ANKRD23Q86SG2 305 aa28.65■■■□□ 2.18
SHMT1-207ENST00000580002 DDX11L8A8MPP1 907 aa28.64■■■□□ 2.18
SHMT1-207ENST00000580002 PIK3CDO00329 1044 aa28.64■■■□□ 2.18
SHMT1-207ENST00000580002 PABPC4Q13310 644 aaKnown RBP eCLIP28.64■■■□□ 2.18
SHMT1-207ENST00000580002 CYP4F22Q6NT55 531 aa28.64■■■□□ 2.18
SHMT1-207ENST00000580002 SPTLC2O15270 562 aa28.63■■■□□ 2.17
SHMT1-207ENST00000580002 UBXN2AP68543 259 aa28.63■■■□□ 2.17
SHMT1-207ENST00000580002 SLC30A10Q6XR72 485 aa28.63■■■□□ 2.17
SHMT1-207ENST00000580002 GPT2Q8TD30 523 aa28.63■■■□□ 2.17
SHMT1-207ENST00000580002 GLT8D2Q9H1C3 349 aa28.63■■■□□ 2.17
SHMT1-207ENST00000580002 PCDHA7Q9UN72 937 aa28.63■■■□□ 2.17
SHMT1-207ENST00000580002 TESPA1A2RU30 521 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-207ENST00000580002 YEATS4O95619 227 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 HSD17B4P51659 736 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 GRIN1Q05586 938 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 NSMFQ6X4W1 530 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 NEK8Q86SG6 692 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 ZFP91Q96JP5 570 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-207ENST00000580002 SPATC1LQ9H0A9 340 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 TDP2O95551 362 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 PAXIP1Q6ZW49 1069 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-207ENST00000580002 CLIC6Q96NY7 704 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 MOV10L1Q9BXT6 1211 aaKnown RBP28.62■■■□□ 2.17
SHMT1-207ENST00000580002 TMEM60Q9H2L4 133 aa28.62■■■□□ 2.17
SHMT1-207ENST00000580002 A0A0G2JMZ2 1700 aa28.61■■■□□ 2.17
SHMT1-207ENST00000580002 CCNT1O60563 726 aaKnown RBP28.61■■■□□ 2.17
SHMT1-207ENST00000580002 TRAPPC10P48553 1259 aa28.61■■■□□ 2.17
SHMT1-207ENST00000580002 RPS6P62753 249 aaKnown RBP28.61■■■□□ 2.17
SHMT1-207ENST00000580002 MB21D1Q8N884 522 aa28.61■■■□□ 2.17
SHMT1-207ENST00000580002 C4orf32Q8N8J7 132 aa28.61■■■□□ 2.17
SHMT1-207ENST00000580002 SYTL5Q8TDW5 730 aaPredicted RBP28.61■■■□□ 2.17
SHMT1-207ENST00000580002 ELP1O95163 1332 aa28.61■■■□□ 2.17
SHMT1-207ENST00000580002 ME1P48163 572 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 PTGDRQ13258 359 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 BAATQ14032 418 aaPredicted RBP28.6■■■□□ 2.17
SHMT1-207ENST00000580002 SPDYE3A6NKU9 549 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 AP3B2Q13367 1082 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 RIOX2Q8IUF8 465 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 CRYGNQ8WXF5 182 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 TAAR1Q96RJ0 339 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 UIMC1Q96RL1 719 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 SLC45A1Q9Y2W3 748 aa28.6■■■□□ 2.17
SHMT1-207ENST00000580002 ANKRD13CQ8N6S4 541 aa28.59■■■□□ 2.17
SHMT1-207ENST00000580002 SMCR8Q8TEV9 937 aaPredicted RBP28.59■■■□□ 2.17
SHMT1-207ENST00000580002 RABGAP1Q9Y3P9 1069 aa28.59■■■□□ 2.17
SHMT1-207ENST00000580002 MANSC4A6NHS7 340 aaPredicted RBP28.58■■■□□ 2.17
SHMT1-207ENST00000580002 SLC37A4O43826 429 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 HTRA3P83110 453 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 AXDND1Q5T1B0 1012 aaPredicted RBP28.58■■■□□ 2.17
SHMT1-207ENST00000580002 RNF207Q6ZRF8 634 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 NCAPG2Q86XI2 1143 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 MCF2L2Q86YR7 1114 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 A1CFQ9NQ94 594 aaKnown RBP28.58■■■□□ 2.17
SHMT1-207ENST00000580002 PNMA3Q9UL41 463 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 DDX49Q9Y6V7 483 aaKnown RBP28.58■■■□□ 2.17
SHMT1-207ENST00000580002 MYH7BA7E2Y1 1941 aa28.58■■■□□ 2.17
SHMT1-207ENST00000580002 ERCC3P19447 782 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 ARHGAP4P98171 946 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 GHRHRQ02643 423 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 IL17AQ16552 155 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 CCDC102AQ96A19 550 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 ACAD9Q9H845 621 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 TRAK2O60296 914 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 FOSP01100 380 aaPredicted RBP28.57■■■□□ 2.16
SHMT1-207ENST00000580002 SPECC1Q5M775 1068 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 KCNG4Q8TDN1 519 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 PORCNQ9H237 461 aa28.57■■■□□ 2.16
SHMT1-207ENST00000580002 FBXO2Q9UK22 296 aaPredicted RBP28.57■■■□□ 2.16
SHMT1-207ENST00000580002 AOC2O75106 756 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 SREBF1P36956 1147 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 ERVK-9P63128 1117 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 ERVK-24P63145 666 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 CSPP1Q1MSJ5 1256 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 POTEDQ86YR6 584 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 IL31RAQ8NI17 732 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 CYP2W1Q8TAV3 490 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 GJA10Q969M2 543 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 PNMA2Q9UL42 364 aa28.56■■■□□ 2.16
SHMT1-207ENST00000580002 UBE2HP62256 183 aa28.55■■■□□ 2.16
SHMT1-207ENST00000580002 ATP2C1P98194 919 aaPredicted RBP28.55■■■□□ 2.16
SHMT1-207ENST00000580002 TKFCQ3LXA3 575 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms