RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 TMEM240Q5SV17 173 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 ANKRD33Q7Z3H0 272 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 TBC1D10CQ8IV04 446 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 TMTC2Q8N394 836 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 NECAB1Q8N987 351 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 CCDC17Q96LX7 622 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 GLT1D1Q96MS3 346 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 TOX2Q96NM4 488 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 UBAC1Q9BSL1 405 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 TSEN34Q9BSV6 310 aaKnown RBP11.78□□□□□ -0.52
SS18-210ENST00000578700 MTA3Q9BTC8 594 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 LRRC2Q9BYS8 371 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 PBX4Q9BYU1 374 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 AGXT2Q9BYV1 514 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 PPP1R12CQ9BZL4 782 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 ZNF287Q9HBT7 754 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 GOPCQ9HD26 462 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 ANAPC4Q9UJX5 808 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 PPP1R9AQ9ULJ8 1098 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 DIS3Q9Y2L1 958 aaKnown RBP11.78□□□□□ -0.52
SS18-210ENST00000578700 CTDP1Q9Y5B0 961 aaPredicted RBP11.78□□□□□ -0.52
SS18-210ENST00000578700 SYNRGQ9UMZ2 1314 aa11.78□□□□□ -0.52
SS18-210ENST00000578700 KLF18A0A0U1RQI7 1052 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 MOXD2PA6NHM9 499 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 CCDC69A6NI79 296 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 GOLGA8BA8MQT2 603 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 USP17L12C9JPN9 530 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 USP17L21D6R901 530 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 CPLX1O14810 134 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 IFIT3O14879 490 aaKnown RBP11.77□□□□□ -0.53
SS18-210ENST00000578700 STX6O43752 255 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 KDM4AO75164 1064 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 CDKL5O76039 1030 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 LARGE1O95461 756 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 CSF2RAP15509 400 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 PDE4BQ07343 736 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 PPIGQ13427 754 aaKnown RBP eCLIP11.77□□□□□ -0.534e-6■■□□□ 13.5
SS18-210ENST00000578700 SKOR2Q2VWA4 1001 aaPredicted RBP11.77□□□□□ -0.53
SS18-210ENST00000578700 TMEM67Q5HYA8 995 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 LARP1BQ659C4 914 aaKnown RBP11.77□□□□□ -0.53
SS18-210ENST00000578700 MFSD5Q6N075 450 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 CCDC174Q6PII3 467 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 ZNF365Q70YC5 407 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 CHST3Q7LGC8 479 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 TMEM199Q8N511 208 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 NUP88Q99567 741 aaPredicted RBP11.77□□□□□ -0.53
SS18-210ENST00000578700 KANSL2Q9H9L4 492 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 ADAMTS5Q9UNA0 930 aa11.77□□□□□ -0.53
SS18-210ENST00000578700 BAZ2AQ9UIF9 1905 aaKnown RBP11.77□□□□□ -0.53
SS18-210ENST00000578700 B4E1Z4 1266 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 BRD1O95696 1058 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 SNAI1O95863 264 aaPredicted RBP11.76□□□□□ -0.53
SS18-210ENST00000578700 ASGR1P07306 291 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 EVCP57679 992 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 SBK1Q52WX2 424 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 C12orf60Q5U649 245 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 SNRNP48Q6IEG0 339 aaKnown RBP11.76□□□□□ -0.53
SS18-210ENST00000578700 CLEC17AQ6ZS10 378 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 C16orf59Q7L2K0 433 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 MICALL1Q8N3F8 863 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 KLHDC9Q8NEP7 349 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 SPC25Q9HBM1 224 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 MSRAQ9UJ68 235 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 ZNF214Q9UL59 606 aaPredicted RBP11.76□□□□□ -0.53
SS18-210ENST00000578700 RIPK3Q9Y572 518 aa11.76□□□□□ -0.53
SS18-210ENST00000578700 VPS37CA5D8V6 355 aaPredicted RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 SH2B2O14492 632 aaPredicted RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 TLR3O15455 904 aaKnown RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 DUSP11O75319 330 aaKnown RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 BAG4O95429 457 aaKnown RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 ZSCAN22P10073 491 aaPredicted RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 SYT1P21579 422 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 PDIA3P30101 505 aaKnown RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 CYP2C18P33260 490 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 COPB2P35606 906 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 LIFRP42702 1097 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 ACVR2BQ13705 512 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 WTAPQ15007 396 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 CCDC178Q5BJE1 867 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 GNASQ5JWF2 1037 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 CTR9Q6PD62 1173 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 C16orf86Q6ZW13 317 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 IQCA1Q86XH1 822 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 ADAMTS19Q8TE59 1207 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 ATXN2LQ8WWM7 1075 aaKnown RBP11.75□□□□□ -0.53
SS18-210ENST00000578700 ASB2Q96Q27 587 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 NKX2-4Q9H2Z4 354 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 THEGQ9P2T0 379 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 TBX21Q9UL17 535 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 SLC12A7Q9Y666 1083 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 NEDD4P46934 1319 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 ROBO3Q96MS0 1386 aa11.75□□□□□ -0.53
SS18-210ENST00000578700 MCM3APO60318 1980 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 A0A0U1RQG5 324 aaPredicted RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 H3BQV1 296 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 ARVCFO00192 962 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 RANBP6O60518 1105 aaKnown RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 ZBED4O75132 1171 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 NCLP19338 710 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms