RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 MOXD2PA6NHM9 499 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 CCDC69A6NI79 296 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 GOLGA8BA8MQT2 603 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 USP17L12C9JPN9 530 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 USP17L21D6R901 530 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 CPLX1O14810 134 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 IFIT3O14879 490 aaKnown RBP11.77□□□□□ -0.53
SS18-207ENST00000577636 STX6O43752 255 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 KDM4AO75164 1064 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 CDKL5O76039 1030 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 LARGE1O95461 756 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 CSF2RAP15509 400 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 PDE4BQ07343 736 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 PPIGQ13427 754 aaKnown RBP eCLIP11.77□□□□□ -0.534e-6■■□□□ 13.5
SS18-207ENST00000577636 SKOR2Q2VWA4 1001 aaPredicted RBP11.77□□□□□ -0.53
SS18-207ENST00000577636 TMEM67Q5HYA8 995 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 LARP1BQ659C4 914 aaKnown RBP11.77□□□□□ -0.53
SS18-207ENST00000577636 MFSD5Q6N075 450 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 CCDC174Q6PII3 467 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 ZNF365Q70YC5 407 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 CHST3Q7LGC8 479 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 TMEM199Q8N511 208 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 NUP88Q99567 741 aaPredicted RBP11.77□□□□□ -0.53
SS18-207ENST00000577636 KANSL2Q9H9L4 492 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 ADAMTS5Q9UNA0 930 aa11.77□□□□□ -0.53
SS18-207ENST00000577636 B4E1Z4 1266 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 BRD1O95696 1058 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 SNAI1O95863 264 aaPredicted RBP11.76□□□□□ -0.53
SS18-207ENST00000577636 ASGR1P07306 291 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 EVCP57679 992 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 SBK1Q52WX2 424 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 C12orf60Q5U649 245 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 SNRNP48Q6IEG0 339 aaKnown RBP11.76□□□□□ -0.53
SS18-207ENST00000577636 CLEC17AQ6ZS10 378 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 C16orf59Q7L2K0 433 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 MICALL1Q8N3F8 863 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 KLHDC9Q8NEP7 349 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 SPC25Q9HBM1 224 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 MSRAQ9UJ68 235 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 ZNF214Q9UL59 606 aaPredicted RBP11.76□□□□□ -0.53
SS18-207ENST00000577636 RIPK3Q9Y572 518 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 CDH23Q9H251 3354 aa11.76□□□□□ -0.53
SS18-207ENST00000577636 ZNF236Q9UL36 1845 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 SPTBN5Q9NRC6 3674 aaKnown RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 VPS37CA5D8V6 355 aaPredicted RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 SH2B2O14492 632 aaPredicted RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 TLR3O15455 904 aaKnown RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 DUSP11O75319 330 aaKnown RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 BAG4O95429 457 aaKnown RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 ZSCAN22P10073 491 aaPredicted RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 SYT1P21579 422 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 PDIA3P30101 505 aaKnown RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 CYP2C18P33260 490 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 COPB2P35606 906 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 LIFRP42702 1097 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 ACVR2BQ13705 512 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 WTAPQ15007 396 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 CCDC178Q5BJE1 867 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 GNASQ5JWF2 1037 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 CTR9Q6PD62 1173 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 C16orf86Q6ZW13 317 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 IQCA1Q86XH1 822 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 ADAMTS19Q8TE59 1207 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 ATXN2LQ8WWM7 1075 aaKnown RBP11.75□□□□□ -0.53
SS18-207ENST00000577636 ASB2Q96Q27 587 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 NKX2-4Q9H2Z4 354 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 THEGQ9P2T0 379 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 TBX21Q9UL17 535 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 SLC12A7Q9Y666 1083 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 NEDD4P46934 1319 aa11.75□□□□□ -0.53
SS18-207ENST00000577636 ZNFX1Q9P2E3 1918 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 A0A0U1RQG5 324 aaPredicted RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 H3BQV1 296 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 ARVCFO00192 962 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 RANBP6O60518 1105 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 ZBED4O75132 1171 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 NCLP19338 710 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 CDK7P50613 346 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 ANTXR2P58335 489 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 MRPS5P82675 430 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 SCRN1Q12765 414 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 ADGRE1Q14246 886 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 CSPP1Q1MSJ5 1256 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 CCDC144BQ3MJ40 725 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 MCTP1Q6DN14 999 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 CCSAPQ6IQ19 270 aaPredicted RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 CYB5R4Q7L1T6 521 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 ANKRD35Q8N283 1001 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 PCSK9Q8NBP7 692 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 REPS2Q8NFH8 660 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 KIFC2Q96AC6 838 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 UHRF1Q96T88 793 aaPredicted RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 SLF1Q9BQI6 1058 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 TEX13BQ9BXU2 312 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 MKNK2Q9HBH9 465 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 RAVER2Q9HCJ3 691 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 ISY1Q9ULR0 285 aaKnown RBP11.74□□□□□ -0.53
SS18-207ENST00000577636 MROH7Q68CQ1 1323 aa11.74□□□□□ -0.53
SS18-207ENST00000577636 CCDC196A0A1B0GTZ2 297 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms