RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ERVK-24P63145 666 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 AMPD3Q01432 767 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 PDE4DQ08499 809 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 DOK7Q18PE1 504 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 CDC42EP5Q6NZY7 148 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 CLEC10AQ8IUN9 316 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 NLGN1Q8N2Q7 840 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 CALML4Q96GE6 196 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 DUSP9Q99956 384 aaKnown RBP11.3□□□□□ -0.6
VPS53-220ENST00000576149 MXD3Q9BW11 206 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 GTPBP4Q9BZE4 634 aaKnown RBP11.3□□□□□ -0.6
VPS53-220ENST00000576149 IRX2Q9BZI1 471 aaPredicted RBP11.3□□□□□ -0.6
VPS53-220ENST00000576149 JMJD4Q9H9V9 463 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 GPCPD1Q9NPB8 672 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 PNMA6FA0A0J9YX94 578 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 A0A0U1RQJ8 604 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 ALDH1B1P30837 517 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 KRT9P35527 623 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 PPP1R2P41236 205 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 STK4Q13043 487 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 CALCRLQ16602 461 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 APOBEC3HQ6NTF7 200 aaKnown RBP11.3□□□□□ -0.6
VPS53-220ENST00000576149 PPP1R18Q6NYC8 613 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 CYP26C1Q6V0L0 522 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 ATRIPQ8WXE1 791 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 EXOC1Q9NV70 894 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 FAM53CQ9NYF3 392 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 BICDL2A1A5D9 508 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 KIF5CO60282 957 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 CCNE1P24864 410 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 SCNN1DP51172 638 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 ASIC1P78348 528 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 GRB10Q13322 594 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 COBLL1Q53SF7 1204 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 ADGRF4Q8IZF3 695 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 P2RX5Q93086 422 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 TEKT1Q969V4 418 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 RIC8AQ9NPQ8 531 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 ZNF446Q9NWS9 450 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 MAGEC2Q9UBF1 373 aaPredicted RBP11.29□□□□□ -0.6
VPS53-220ENST00000576149 LRWD1Q9UFC0 647 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 SLC37A4O43826 429 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 TDP2O95551 362 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 PPP2R3AQ06190 1150 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 CSGALNACT2Q8N6G5 542 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 BLOC1S4Q9NUP1 217 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 NRXN2Q9P2S2 1712 aa11.29□□□□□ -0.6
VPS53-220ENST00000576149 TTC26A0AVF1 554 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 PPP1R11O60927 126 aaPredicted RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 HLA-DOAP06340 250 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 FCER1AP12319 257 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 ZSCAN20P17040 1043 aaPredicted RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 CLK2P49760 499 aaKnown RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 DNM2P50570 870 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 CLCN6P51797 869 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 PDIA5Q14554 519 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 TMEM266Q2M3C6 531 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 GPATCH4Q5T3I0 446 aaKnown RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 ANKRD40Q6AI12 368 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 PPP4R3AQ6IN85 833 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 CNNM4Q6P4Q7 775 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 SV2BQ7L1I2 683 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 COL23A1Q86Y22 540 aaPredicted RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 ACRBPQ8NEB7 543 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 PNMA5Q96PV4 448 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 STK17AQ9UEE5 414 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 EP400Q96L91 3159 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 PDE6BP35913 854 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 NFIAQ12857 509 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 TTBK2Q6IQ55 1244 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 RSRC2Q7L4I2 434 aaKnown RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 OR8K1Q8NGG5 319 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 MTMR8Q96EF0 704 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 DNAJC7Q99615 494 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 TUBGCP2Q9BSJ2 902 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 RAB34Q9BZG1 259 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 EHD4Q9H223 541 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 CAPN11Q9UMQ6 739 aa11.28□□□□□ -0.6
VPS53-220ENST00000576149 LUC7L2Q9Y383 392 aaKnown RBP11.28□□□□□ -0.6
VPS53-220ENST00000576149 FAM114A1Q8IWE2 563 aa11.27□□□□□ -0.6
VPS53-220ENST00000576149 KIAA0895Q8NCT3 520 aa11.27□□□□□ -0.6
VPS53-220ENST00000576149 MASTLQ96GX5 879 aa11.27□□□□□ -0.6
VPS53-220ENST00000576149 CCDC17Q96LX7 622 aa11.27□□□□□ -0.6
VPS53-220ENST00000576149 CHP1Q99653 195 aa11.27□□□□□ -0.6
VPS53-220ENST00000576149 PVALEFA0A1B0GWK0 134 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 MYMKA6NI61 221 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 B4DLN1 442 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 G3V3G9 751 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 PES1O00541 588 aaKnown RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 MPHOSPH10O00566 681 aaKnown RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 ZBTB5O15062 677 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 ARHGAP25P42331 645 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 CRKP46108 304 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 TNNI2P48788 182 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 MRPL12P52815 198 aaKnown RBP11.27□□□□□ -0.61
VPS53-220ENST00000576149 ZNF569Q5MCW4 686 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 DCAF8Q5TAQ9 597 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 UNC13DQ70J99 1090 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 PODNQ7Z5L7 613 aa11.27□□□□□ -0.61
VPS53-220ENST00000576149 ZFPM1Q8IX07 1006 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms