RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 AHI1Q8N157 1196 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 CNTD1Q8N815 330 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 JPH3Q8WXH2 748 aaPredicted RBP7.26□□□□□ -1.25
VPS53-219ENST00000576019 PPP1R14AQ96A00 147 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 LGR4Q9BXB1 951 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 RHOBTB2Q9BYZ6 727 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 PPCSQ9HAB8 311 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 LRP2BPQ9P2M1 347 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 TAGLN3Q9UI15 199 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 PCDHA4Q9UN74 947 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 TNPO3Q9Y5L0 923 aaKnown RBP7.26□□□□□ -1.25
VPS53-219ENST00000576019 TTC28Q96AY4 2481 aa7.26□□□□□ -1.25
VPS53-219ENST00000576019 TIAM2Q8IVF5 1701 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 LOC102724428A0A0B4J2F2 783 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 TNFRSF10CO14798 259 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 F2P00734 622 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 IFIT2P09913 472 aaKnown RBP7.25□□□□□ -1.25
VPS53-219ENST00000576019 ZSCAN20P17040 1043 aaPredicted RBP7.25□□□□□ -1.25
VPS53-219ENST00000576019 PLCG1P19174 1290 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 POLR2BP30876 1174 aaKnown RBP7.25□□□□□ -1.25
VPS53-219ENST00000576019 SIK1P57059 783 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 TGFB2P61812 414 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 SUMO1P63165 101 aaKnown RBP7.25□□□□□ -1.25
VPS53-219ENST00000576019 DHCR24Q15392 516 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 CEP135Q66GS9 1140 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 CLEC4GQ6UXB4 293 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 BRAPQ7Z569 592 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 VN1R5Q7Z5H4 357 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 E2F7Q96AV8 911 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 TIFAQ96CG3 184 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 PLPPR2Q96GM1 343 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 ACSBG1Q96GR2 724 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 CAPNS2Q96L46 248 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 ZC3H12CQ9C0D7 883 aaKnown RBP7.25□□□□□ -1.25
VPS53-219ENST00000576019 CNNM2Q9H8M5 875 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 TRIM39Q9HCM9 518 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 NDOR1Q9UHB4 597 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 IP6K2Q9UHH9 426 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 ZNF214Q9UL59 606 aaPredicted RBP7.25□□□□□ -1.25
VPS53-219ENST00000576019 CEP290O15078 2479 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 TNKSO95271 1327 aa7.25□□□□□ -1.25
VPS53-219ENST00000576019 IFT172Q9UG01 1749 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 FIGNL2A6NMB9 653 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 GFRA2O00451 464 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 PRODHO43272 600 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 OPA1O60313 960 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 BRINP1O60477 761 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 ABLIM3O94929 683 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 GHRHP01286 108 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 MAP2K2P36507 400 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 ECE1P42892 770 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 ID4P47928 161 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 NEK3P51956 506 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 LMOD3Q0VAK6 560 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 INPP5AQ14642 412 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 GRAMD1BQ3KR37 738 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 SYDE2Q5VT97 1194 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 TDRD10Q5VZ19 366 aaKnown RBP7.24□□□□□ -1.25
VPS53-219ENST00000576019 INTS3Q68E01 1043 aaKnown RBP7.24□□□□□ -1.25
VPS53-219ENST00000576019 IL31Q6EBC2 164 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 LRFN4Q6PJG9 635 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 PODNQ7Z5L7 613 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 FGD2Q7Z6J4 655 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 SCUBE1Q8IWY4 988 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 CYP4X1Q8N118 509 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 SLC7A14Q8TBB6 771 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 GPBAR1Q8TDU6 330 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 PPM1EQ8WY54 764 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 NAP1L4Q99733 375 aaKnown RBP7.24□□□□□ -1.25
VPS53-219ENST00000576019 PUS7LQ9H0K6 701 aaKnown RBP7.24□□□□□ -1.25
VPS53-219ENST00000576019 PTPRHQ9HD43 1115 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 OBP2AQ9NY56 170 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 LY75O60449 1722 aa7.24□□□□□ -1.25
VPS53-219ENST00000576019 LAMA2P24043 3122 aaKnown RBP7.23□□□□□ -1.25
VPS53-219ENST00000576019 FAM187AA6NFU0 413 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 ZBTB42B2RXF5 422 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 SMNDC1O75940 238 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS53-219ENST00000576019 FGAP02671 866 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 GSTP1P09211 210 aaKnown RBP7.23□□□□□ -1.25
VPS53-219ENST00000576019 MAPTP10636 758 aaKnown RBP7.23□□□□□ -1.25
VPS53-219ENST00000576019 SMPD1P17405 629 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 EIF2AK2P19525 551 aaKnown RBP7.23□□□□□ -1.25
VPS53-219ENST00000576019 GRIA2P42262 883 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 GPLD1P80108 840 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 ABCB5Q2M3G0 1257 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 PKDCCQ504Y2 493 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 FIGNL1Q6PIW4 674 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 SPICE1Q8N0Z3 855 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 HPS1Q92902 700 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 USP7Q93009 1102 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 DCAF5Q96JK2 942 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 TTC1Q99614 292 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 IGFLR1Q9H665 355 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 SLC52A2Q9HAB3 445 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 FBRSQ9HAH7 460 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 LUC7LQ9NQ29 371 aaKnown RBP7.23□□□□□ -1.25
VPS53-219ENST00000576019 HCN2Q9UL51 889 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 SOX13Q9UN79 622 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 DYRK1BQ9Y463 629 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 DAAM1Q9Y4D1 1078 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms