RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 POTEB2H3BUK9 544 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 IGHA2P01877 340 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 CDC27P30260 824 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 METAP2P50579 478 aaKnown RBP eCLIP18.32■□□□□ 0.52
CHD3-215ENST00000572750 MFSD14CQ5VZR4 134 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 IL17RAQ96F46 866 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 PURBQ96QR8 312 aaKnown RBP18.32■□□□□ 0.52
CHD3-215ENST00000572750 LZTS2Q9BRK4 669 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 AMNQ9BXJ7 453 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 RNF208Q9H0X6 261 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 RBM28Q9NW13 759 aaKnown RBP18.32■□□□□ 0.52
CHD3-215ENST00000572750 NR2E3Q9Y5X4 410 aa18.32■□□□□ 0.52
CHD3-215ENST00000572750 ALPK3Q96L96 1907 aa18.31■□□□□ 0.52
CHD3-215ENST00000572750 PNMA6FA0A0J9YX94 578 aa18.31■□□□□ 0.52
CHD3-215ENST00000572750 CCND3P30281 292 aaPredicted RBP18.31■□□□□ 0.52
CHD3-215ENST00000572750 RCAN1P53805 252 aa18.31■□□□□ 0.52
CHD3-215ENST00000572750 BAATQ14032 418 aaPredicted RBP18.31■□□□□ 0.52
CHD3-215ENST00000572750 FAM133AQ8N9E0 248 aa18.31■□□□□ 0.52
CHD3-215ENST00000572750 RRP36Q96EU6 259 aaKnown RBP18.31■□□□□ 0.52
CHD3-215ENST00000572750 HTATIP2Q9BUP3 242 aa18.31■□□□□ 0.52
CHD3-215ENST00000572750 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.31■□□□□ 0.52
CHD3-215ENST00000572750 FAM217BQ9NTX9 383 aaPredicted RBP18.31■□□□□ 0.52
CHD3-215ENST00000572750 MTMR10Q9NXD2 777 aa18.31■□□□□ 0.52
CHD3-215ENST00000572750 SEC63Q9UGP8 760 aaKnown RBP18.31■□□□□ 0.52
CHD3-215ENST00000572750 DIS3Q9Y2L1 958 aaKnown RBP18.31■□□□□ 0.52
CHD3-215ENST00000572750 SOWAHBA6NEL2 793 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 OPLAHO14841 1288 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 GJB1P08034 283 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 CALML3P27482 149 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 RPS6P62753 249 aaKnown RBP18.3■□□□□ 0.52
CHD3-215ENST00000572750 RNF207Q6ZRF8 634 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 TRPV1Q8NER1 839 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 TINF2Q9BSI4 451 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 PAK6Q9NQU5 681 aaPredicted RBP18.3■□□□□ 0.52
CHD3-215ENST00000572750 PCDHA1Q9Y5I3 950 aa18.3■□□□□ 0.52
CHD3-215ENST00000572750 DDX49Q9Y6V7 483 aaKnown RBP18.3■□□□□ 0.52
CHD3-215ENST00000572750 RPTORQ8N122 1335 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 CDH23Q9H251 3354 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 CYBAP13498 195 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 SMARCA1P28370 1054 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 FUT2Q10981 343 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 DEFB118Q96PH6 123 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 C22orf23Q9BZE7 217 aa18.29■□□□□ 0.52
CHD3-215ENST00000572750 NCOA5Q9HCD5 579 aaKnown RBP18.29■□□□□ 0.52
CHD3-215ENST00000572750 HMX1Q9NP08 348 aaPredicted RBP18.29■□□□□ 0.52
CHD3-215ENST00000572750 MRPL11Q9Y3B7 192 aaKnown RBP18.29■□□□□ 0.52
CHD3-215ENST00000572750 PDIA3P30101 505 aaKnown RBP18.28■□□□□ 0.52
CHD3-215ENST00000572750 ADD1P35611 737 aaKnown RBP18.28■□□□□ 0.52
CHD3-215ENST00000572750 EVCP57679 992 aa18.28■□□□□ 0.52
CHD3-215ENST00000572750 CCT2P78371 535 aaKnown RBP18.28■□□□□ 0.52
CHD3-215ENST00000572750 PRAMEF19Q5SWL8 479 aa18.28■□□□□ 0.52
CHD3-215ENST00000572750 NOL8Q76FK4 1167 aaKnown RBP18.28■□□□□ 0.52
CHD3-215ENST00000572750 ZNF467Q7Z7K2 595 aaPredicted RBP18.28■□□□□ 0.52
CHD3-215ENST00000572750 TBC1D5Q92609 795 aa18.28■□□□□ 0.52
CHD3-215ENST00000572750 SYNGAP1Q96PV0 1343 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 FARP2O94887 1054 aaPredicted RBP18.27■□□□□ 0.52
CHD3-215ENST00000572750 AK2P54819 239 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 STK3Q13188 491 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 GPR153Q6NV75 609 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 MAMDC4Q6UXC1 1216 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 ARMCX2Q7L311 632 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 GPKOWQ92917 476 aaPredicted RBP eCLIP18.27■□□□□ 0.52
CHD3-215ENST00000572750 GDF15Q99988 308 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 COL20A1Q9P218 1284 aa18.27■□□□□ 0.52
CHD3-215ENST00000572750 CCDC196A0A1B0GTZ2 297 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 PPFIA3O75145 1194 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 CFBP00751 764 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 CNGA1P29973 690 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 NEK4P51957 841 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 HEATR3Q7Z4Q2 680 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 MCF2L2Q86YR7 1114 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.26■□□□□ 0.51
CHD3-215ENST00000572750 MSL3Q8N5Y2 521 aaKnown RBP18.26■□□□□ 0.51
CHD3-215ENST00000572750 U2AF1L4Q8WU68 220 aaKnown RBP18.26■□□□□ 0.51
CHD3-215ENST00000572750 KIF2CQ99661 725 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 UPF2Q9HAU5 1272 aaKnown RBP18.26■□□□□ 0.51
CHD3-215ENST00000572750 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.26■□□□□ 0.51
CHD3-215ENST00000572750 TTC28Q96AY4 2481 aa18.26■□□□□ 0.51
CHD3-215ENST00000572750 SNAI1O95863 264 aaPredicted RBP18.25■□□□□ 0.51
CHD3-215ENST00000572750 HOXA13P31271 388 aaPredicted RBP18.25■□□□□ 0.51
CHD3-215ENST00000572750 RBM25P49756 843 aaKnown RBP18.25■□□□□ 0.51
CHD3-215ENST00000572750 ALDH5A1P51649 535 aaPredicted RBP18.25■□□□□ 0.51
CHD3-215ENST00000572750 TRAF1Q13077 416 aa18.25■□□□□ 0.51
CHD3-215ENST00000572750 RGS22Q8NE09 1264 aa18.25■□□□□ 0.51
CHD3-215ENST00000572750 SYTL5Q8TDW5 730 aaPredicted RBP18.25■□□□□ 0.51
CHD3-215ENST00000572750 PHKBQ93100 1093 aa18.25■□□□□ 0.51
CHD3-215ENST00000572750 ZHX1Q9UKY1 873 aaPredicted RBP18.25■□□□□ 0.51
CHD3-215ENST00000572750 TPCN1Q9ULQ1 816 aa18.25■□□□□ 0.51
CHD3-215ENST00000572750 CNPY2Q9Y2B0 182 aa18.25■□□□□ 0.51
CHD3-215ENST00000572750 EVI5O60447 810 aa18.24■□□□□ 0.51
CHD3-215ENST00000572750 HSD17B4P51659 736 aa18.24■□□□□ 0.51
CHD3-215ENST00000572750 PPP2R5BQ15173 497 aa18.24■□□□□ 0.51
CHD3-215ENST00000572750 ANO1Q5XXA6 986 aa18.24■□□□□ 0.51
CHD3-215ENST00000572750 WWC2Q6AWC2 1192 aa18.24■□□□□ 0.51
CHD3-215ENST00000572750 LENG1Q96BZ8 264 aaPredicted RBP18.24■□□□□ 0.51
CHD3-215ENST00000572750 ZNF274Q96GC6 653 aaPredicted RBP18.24■□□□□ 0.51
CHD3-215ENST00000572750 ALDH8A1Q9H2A2 487 aaPredicted RBP18.24■□□□□ 0.51
CHD3-215ENST00000572750 ADD3Q9UEY8 706 aaKnown RBP18.24■□□□□ 0.51
CHD3-215ENST00000572750 DDX20Q9UHI6 824 aaKnown RBP18.24■□□□□ 0.51
CHD3-215ENST00000572750 V9GY48 417 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms