RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SLC15A5A6NIM6 579 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 hCG_1984214I3L0E3 225 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 PIK3CDO00329 1044 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 STRNO43815 780 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 CDKL5O76039 1030 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 HOXA13P31271 388 aaPredicted RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 COPB2P35606 906 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 SLC4A3P48751 1232 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 CTCFP49711 727 aaPredicted RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 BAATQ14032 418 aaPredicted RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 CCL14Q16627 93 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 UBE2SQ16763 222 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 RPTORQ8N122 1335 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 ZNF713Q8N859 430 aaPredicted RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 OXER1Q8TDS5 423 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 INTS4Q96HW7 963 aaKnown RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 ALG1Q9BT22 464 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 BEGAINQ9BUH8 593 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 DOCK5Q9H7D0 1870 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 RIC8AQ9NPQ8 531 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 SH3GLB2Q9NR46 395 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 RBM27Q9P2N5 1060 aaKnown RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 SEC63Q9UGP8 760 aaKnown RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 SRRDQ9UH36 339 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 FBXO40Q9UH90 709 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 PNMA2Q9UL42 364 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 KCNJ14Q9UNX9 436 aa10.71□□□□□ -0.69
VPS35-211ENST00000569950 MRPL11Q9Y3B7 192 aaKnown RBP10.71□□□□□ -0.69
VPS35-211ENST00000569950 TNPO2O14787 897 aaKnown RBP10.7□□□□□ -0.7
VPS35-211ENST00000569950 EDNRBP24530 442 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 GJB2P29033 226 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 DDIT3P35638 169 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 FLT3LGP49771 235 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 FCGRTP55899 365 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 MAP2K5Q13163 448 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 EARS2Q5JPH6 523 aaKnown RBP10.7□□□□□ -0.7
VPS35-211ENST00000569950 KRT40Q6A162 431 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 NSMFQ6X4W1 530 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 TRIM22Q8IYM9 498 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 DAGLBQ8NCG7 672 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 IL31RAQ8NI17 732 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 RASGRP4Q8TDF6 673 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 MORC4Q8TE76 937 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 ERO1AQ96HE7 468 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 TAAR1Q96RJ0 339 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 MMP19Q99542 508 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 MAF1Q9H063 256 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 KATNBL1Q9H079 304 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 TMEM260Q9NX78 707 aa10.7□□□□□ -0.7
VPS35-211ENST00000569950 PFASO15067 1338 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 FAM205CA6NFA0 338 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 SMCO2A6NFE2 343 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 KIF28PB7ZC32 967 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 FCER1AP12319 257 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 NAPAP54920 295 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 HMGN5P82970 282 aaKnown RBP10.69□□□□□ -0.7
VPS35-211ENST00000569950 IRF5Q13568 498 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 CPLX2Q6PUV4 134 aaKnown RBP10.69□□□□□ -0.7
VPS35-211ENST00000569950 RNF207Q6ZRF8 634 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 FAM177A1Q8N128 213 aaPredicted RBP10.69□□□□□ -0.7
VPS35-211ENST00000569950 FBXO18Q8NFZ0 1043 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 TRIB2Q92519 343 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 MAML3Q96JK9 1138 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 PSTPIP2Q9H939 334 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 PRDM10Q9NQV6 1147 aa10.69□□□□□ -0.7
VPS35-211ENST00000569950 RBM19Q9Y4C8 960 aaKnown RBP10.69□□□□□ -0.7
VPS35-211ENST00000569950 WDR81Q562E7 1941 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 KIAA0100Q14667 2235 aaKnown RBP10.68□□□□□ -0.7
VPS35-211ENST00000569950 DNAH12Q6ZR08 3092 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 WNT7AO00755 349 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 RGS20O76081 388 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 SNAI1O95863 264 aaPredicted RBP10.68□□□□□ -0.7
VPS35-211ENST00000569950 CFBP00751 764 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 GNRH1P01148 92 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 MMP1P03956 469 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 XRCC5P13010 732 aaKnown RBP10.68□□□□□ -0.7
VPS35-211ENST00000569950 CALML3P27482 149 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 TRIM32Q13049 653 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 KCTD2Q14681 263 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 MAP3K21Q5TCX8 1036 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 WDR78Q5VTH9 848 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 MAMDC4Q6UXC1 1216 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 HSCBQ8IWL3 235 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 ANKRD35Q8N283 1001 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 SAMD3Q8N6K7 520 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 TRPV1Q8NER1 839 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 SOCS4Q8WXH5 440 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 PGBD1Q96JS3 809 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 APBA2Q99767 749 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 FOXD4L1Q9NU39 408 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 MAP3K20Q9NYL2 800 aaKnown RBP10.68□□□□□ -0.7
VPS35-211ENST00000569950 PCDHA6Q9UN73 950 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 PCDHA4Q9UN74 947 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 DIS3Q9Y2L1 958 aaKnown RBP10.68□□□□□ -0.7
VPS35-211ENST00000569950 PTPN22Q9Y2R2 807 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 CTDP1Q9Y5B0 961 aaPredicted RBP10.68□□□□□ -0.7
VPS35-211ENST00000569950 PCDHA8Q9Y5H6 950 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 PTCH2Q9Y6C5 1203 aa10.68□□□□□ -0.7
VPS35-211ENST00000569950 GCOM1H8Y6P7 765 aaPredicted RBP10.67□□□□□ -0.7
VPS35-211ENST00000569950 ADCY6O43306 1168 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms