RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 NYAP2Q9P242 653 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 CLIP2Q9UDT6 1046 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 COG6Q9Y2V7 657 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 Q9Y3F1 56 aa14.11□□□□□ -0.15
CLK3-222ENST00000568232 H3BQ06 376 aaPredicted RBP14.1□□□□□ -0.15
CLK3-222ENST00000568232 RASA1P20936 1047 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 KCNJ6P48051 423 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 WDR5P61964 334 aaKnown RBP14.1□□□□□ -0.15
CLK3-222ENST00000568232 NBPF20Q3BBV1 942 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 AMOTL1Q8IY63 956 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 RETREG2Q8NC44 543 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 MS4A3Q96HJ5 214 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 ACAD9Q9H845 621 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 IL1RAPL2Q9NP60 686 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 EXOC6BQ9Y2D4 811 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 C5orf42Q9H799 3197 aa14.1□□□□□ -0.15
CLK3-222ENST00000568232 BAZ2AQ9UIF9 1905 aaKnown RBP14.09□□□□□ -0.15
CLK3-222ENST00000568232 IPO8O15397 1037 aaKnown RBP14.09□□□□□ -0.15
CLK3-222ENST00000568232 BAIAP3O94812 1187 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 OAZ1P54368 228 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 ERVK-21P61565 698 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 GPNMBQ14956 572 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 CHMP4CQ96CF2 233 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 RNF146Q9NTX7 359 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 POLR3EQ9NVU0 708 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 FEM1BQ9UK73 627 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 SLC4A4Q9Y6R1 1079 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 BRWD1Q9NSI6 2320 aa14.09□□□□□ -0.15
CLK3-222ENST00000568232 LINC01553A4QN01 128 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 ADD2P35612 726 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 TCTN1Q2MV58 587 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 MUM1L1Q5H9M0 696 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 NEK9Q8TD19 979 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 TRERF1Q96PN7 1200 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 TGS1Q96RS0 853 aaKnown RBP14.08□□□□□ -0.16
CLK3-222ENST00000568232 MTG1Q9BT17 334 aaPredicted RBP14.08□□□□□ -0.16
CLK3-222ENST00000568232 BCL11AQ9H165 835 aa14.08□□□□□ -0.16
CLK3-222ENST00000568232 PTPRSQ13332 1948 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 ALAS1P13196 640 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 SNAP25P60880 206 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 ZP2Q05996 745 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 BFSP2Q13515 415 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 DUSP28Q4G0W2 176 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 FAM117BQ6P1L5 589 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 LRRC47Q8N1G4 583 aaKnown RBP14.07□□□□□ -0.16
CLK3-222ENST00000568232 PRSS33Q8NF86 280 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 RAD9AQ99638 391 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 C17orf80Q9BSJ5 609 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 GPHNQ9NQX3 736 aaPredicted RBP14.07□□□□□ -0.16
CLK3-222ENST00000568232 ZBED9Q6R2W3 1325 aa14.07□□□□□ -0.16
CLK3-222ENST00000568232 IGKV6D-41A0A0C4DH26 115 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 TMEM232C9JQI7 657 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 GJB5O95377 273 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 CHMP4BP1P59074 171 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 IER5LQ5T953 404 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 EP400NLQ6ZTU2 488 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 DDRGK1Q96HY6 314 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 WDR11Q9BZH6 1224 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 MKNK2Q9HBH9 465 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 VTA1Q9NP79 307 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 CYP39A1Q9NYL5 469 aa14.06□□□□□ -0.16
CLK3-222ENST00000568232 ISY1Q9ULR0 285 aaKnown RBP14.06□□□□□ -0.16
CLK3-222ENST00000568232 GREB1LQ9C091 1923 aaPredicted RBP14.05□□□□□ -0.16
CLK3-222ENST00000568232 TET1Q8NFU7 2136 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 ST18O60284 1047 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 BMP3P12645 472 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 IRS1P35568 1242 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 CPT1AP50416 773 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 PUS10Q3MIT2 529 aaKnown RBP14.05□□□□□ -0.16
CLK3-222ENST00000568232 NFRKBQ6P4R8 1299 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 OR6J1Q8NGC5 347 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 MKL1Q969V6 931 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 CEP95Q96GE4 821 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 MFSD14AQ96MC6 490 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 PUS7LQ9H0K6 701 aaKnown RBP14.05□□□□□ -0.16
CLK3-222ENST00000568232 PAG1Q9NWQ8 432 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 NOD1Q9Y239 953 aa14.05□□□□□ -0.16
CLK3-222ENST00000568232 NUBP1P53384 320 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 SLFN13Q68D06 897 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 NSMFQ6X4W1 530 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 PLCD3Q8N3E9 789 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 FBXO22Q8NEZ5 403 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 RHPN1Q8TCX5 695 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 MORC4Q8TE76 937 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 COPS5Q92905 334 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 KIF12Q96FN5 646 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 CTAGE1Q96RT6 745 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 CRBNQ96SW2 442 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 BOLA2Q9H3K6 86 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 MTMR4Q9NYA4 1195 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 ARPP21Q9UBL0 812 aaPredicted RBP14.04□□□□□ -0.16
CLK3-222ENST00000568232 MUTYHQ9UIF7 546 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 TANC1Q9C0D5 1861 aa14.04□□□□□ -0.16
CLK3-222ENST00000568232 MINDY4BA8MYZ0 360 aa14.03□□□□□ -0.16
CLK3-222ENST00000568232 NBNO60934 754 aa14.03□□□□□ -0.16
CLK3-222ENST00000568232 PRDM1O75626 825 aa14.03□□□□□ -0.16
CLK3-222ENST00000568232 STAT2P52630 851 aa14.03□□□□□ -0.16
CLK3-222ENST00000568232 IKQ13123 557 aaPredicted RBP14.03□□□□□ -0.16
CLK3-222ENST00000568232 PTGISQ16647 500 aa14.03□□□□□ -0.16
CLK3-222ENST00000568232 TKFCQ3LXA3 575 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms