RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TRIM65Q6PJ69 517 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 TOGARAM2Q6ZUX3 1019 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 TMEM179Q6ZVK1 233 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 VPS16Q9H269 839 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 PDCL3Q9H2J4 239 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 BLOC1S4Q9NUP1 217 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 TAB2Q9NYJ8 693 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 ATF5Q9Y2D1 282 aaPredicted RBP22.78■■□□□ 1.24
CLN3-230ENST00000568076 POTEMA6NI47 508 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 CC2D2BQ6DHV5 1058 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 CALML4Q96GE6 196 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 PANX2Q96RD6 677 aa22.78■■□□□ 1.24
CLN3-230ENST00000568076 RGS17Q9UGC6 210 aaPredicted RBP22.78■■□□□ 1.24
CLN3-230ENST00000568076 ITIH6Q6UXX5 1313 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 N4BP3O15049 544 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 GYPCP04921 128 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 NCBP1Q09161 790 aaKnown RBP22.77■■□□□ 1.24
CLN3-230ENST00000568076 RRP1BQ14684 758 aaKnown RBP22.77■■□□□ 1.24
CLN3-230ENST00000568076 ABCB5Q2M3G0 1257 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 SUPT20HQ8NEM7 779 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 CPLX3Q8WVH0 158 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 ANKRD7Q92527 254 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 NUDT12Q9BQG2 462 aa22.77■■□□□ 1.24
CLN3-230ENST00000568076 ENTPD3O75355 529 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 ASIC1P78348 528 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 PDE4DQ08499 809 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 STK4Q13043 487 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 PDIA5Q14554 519 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 NAA30Q147X3 362 aaPredicted RBP22.76■■□□□ 1.23
CLN3-230ENST00000568076 CDC37Q16543 378 aaPredicted RBP22.76■■□□□ 1.23
CLN3-230ENST00000568076 TMEM266Q2M3C6 531 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 TTI2Q6NXR4 508 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 PPFIBP1Q86W92 1011 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 HAS1Q92839 578 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L15C9J2P7 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L13C9JLJ4 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L11C9JVI0 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L18D6R9N7 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L22D6RA61 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L17D6RBQ6 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L19D6RCP7 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L20D6RJB6 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 F5H6K3 240 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 MFAP3LO75121 409 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 CASP14P31944 242 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 ETF1P62495 437 aaKnown RBP22.76■■□□□ 1.23
CLN3-230ENST00000568076 KLRC3Q07444 240 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L24Q0WX57 530 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 USP17L6PQ6QN14 398 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 DDX25Q9UHL0 483 aaKnown RBP22.76■■□□□ 1.23
CLN3-230ENST00000568076 PCDHA1Q9Y5I3 950 aa22.76■■□□□ 1.23
CLN3-230ENST00000568076 PSMA7O14818 248 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 FANCGO15287 622 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 ZSCAN12O43309 604 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 TUBB4AP04350 444 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 FCER1AP12319 257 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 FXR1P51114 621 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLN3-230ENST00000568076 STIM1Q13586 685 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 MTF1Q14872 753 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 CREBRFQ8IUR6 639 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 GJA10Q969M2 543 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 MAP7D2Q96T17 732 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 NUP88Q99567 741 aaPredicted RBP22.75■■□□□ 1.23
CLN3-230ENST00000568076 EXOC1Q9NV70 894 aa22.75■■□□□ 1.23
CLN3-230ENST00000568076 MCM6Q14566 821 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 SYCP1Q15431 976 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 GMCL1P1Q8NEA9 526 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 DHTKD1Q96HY7 919 aaPredicted RBP22.74■■□□□ 1.23
CLN3-230ENST00000568076 DUSP9Q99956 384 aaKnown RBP22.74■■□□□ 1.23
CLN3-230ENST00000568076 ZNF215Q9UL58 517 aaPredicted RBP22.74■■□□□ 1.23
CLN3-230ENST00000568076 MYH7BA7E2Y1 1941 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 SOWAHDA6NJG2 315 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 GH2P01242 217 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 AMPD3Q01432 767 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 POTEAQ6S8J7 498 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 ANKRD20A12PQ8NF67 263 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 THAP9Q9H5L6 903 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 L2HGDHQ9H9P8 463 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 STK17AQ9UEE5 414 aa22.74■■□□□ 1.23
CLN3-230ENST00000568076 MYMKA6NI61 221 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 RNF225M0QZC1 329 aaPredicted RBP22.73■■□□□ 1.23
CLN3-230ENST00000568076 NDUFB10O96000 172 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 SNAP25P60880 206 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 SV2BQ7L1I2 683 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 MTERF4Q7Z6M4 381 aaKnown RBP22.73■■□□□ 1.23
CLN3-230ENST00000568076 SNX29Q8TEQ0 813 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 HPS3Q969F9 1004 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 TRIM47Q96LD4 638 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 CSRNP1Q96S65 589 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 DESI2Q9BSY9 194 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 SRRTQ9BXP5 876 aaKnown RBP22.73■■□□□ 1.23
CLN3-230ENST00000568076 COL2A1P02458 1487 aaPredicted RBP22.73■■□□□ 1.23
CLN3-230ENST00000568076 ARFGEF1Q9Y6D6 1849 aa22.73■■□□□ 1.23
CLN3-230ENST00000568076 ECM1Q16610 540 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 TMEM119Q4V9L6 283 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 RAD9BQ6WBX8 426 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 KCNK18Q7Z418 384 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 KIAA0895Q8NCT3 520 aa22.72■■□□□ 1.23
CLN3-230ENST00000568076 LARP4BQ92615 738 aaKnown RBP22.72■■□□□ 1.23
CLN3-230ENST00000568076 GMCL1Q96IK5 515 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms