RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CASP8AP2Q9UKL3 1982 aa7.37□□□□□ -1.23
VPS39-209ENST00000568029 WDR33Q9C0J8 1336 aaKnown RBP7.36□□□□□ -1.23
VPS39-209ENST00000568029 USP42Q9H9J4 1324 aaKnown RBP7.36□□□□□ -1.23
VPS39-209ENST00000568029 TMPRSS2O15393 492 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 FGRP09769 529 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 ADH5P11766 374 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 IMPDH2P12268 514 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 ZNF165P49910 485 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 SOX4Q06945 474 aaPredicted RBP7.36□□□□□ -1.23
VPS39-209ENST00000568029 GRM1Q13255 1194 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 ADGRE1Q14246 886 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 MVPQ14764 893 aaKnown RBP7.36□□□□□ -1.23
VPS39-209ENST00000568029 WIPI1Q5MNZ9 446 aaPredicted RBP7.36□□□□□ -1.23
VPS39-209ENST00000568029 SHISA2Q6UWI4 295 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 ATF7IPQ6VMQ6 1270 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.36□□□□□ -1.23
VPS39-209ENST00000568029 FBXO27Q8NI29 283 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 SSH1Q8WYL5 1049 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 PLPPR2Q96GM1 343 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 DRC1Q96MC2 740 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 ATXN3LQ9H3M9 355 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 SCN4AP35499 1836 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 SCN11AQ9UI33 1791 aa7.36□□□□□ -1.23
VPS39-209ENST00000568029 PDE4DIPQ5VU43 2346 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 CNTNAP4Q9C0A0 1308 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 RASSF10A6NK89 507 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 FANCGO15287 622 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 ZNF853P0CG23 659 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 RFC4P35249 363 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 INPP5AQ14642 412 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 UVSSAQ2YD98 709 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 SEZ6Q53EL9 994 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 SULT6B1Q6IMI4 303 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 FDX2Q6P4F2 183 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 ARHGAP45Q92619 1136 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 ELMO3Q96BJ8 720 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 GINM1Q9NU53 330 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 TMOD3Q9NYL9 352 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 NOB1Q9ULX3 412 aaKnown RBP7.35□□□□□ -1.23
VPS39-209ENST00000568029 DDX19BQ9UMR2 479 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 EFR3BQ9Y2G0 817 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 SLX4Q8IY92 1834 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 ARFGEF2Q9Y6D5 1785 aa7.35□□□□□ -1.23
VPS39-209ENST00000568029 KIF24Q5T7B8 1368 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 ZNF541Q9H0D2 1346 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 RPS6KA4O75676 772 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 PDE4BQ07343 736 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 MBTPS1Q14703 1052 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 CYP4F22Q6NT55 531 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 RNF214Q8ND24 703 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 IPO9Q96P70 1041 aaKnown RBP7.34□□□□□ -1.23
VPS39-209ENST00000568029 ANP32EQ9BTT0 268 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 TANGO6Q9C0B7 1094 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 PRKAG2Q9UGJ0 569 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 ADAM30Q9UKF2 790 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 PPP1R9AQ9ULJ8 1098 aa7.34□□□□□ -1.23
VPS39-209ENST00000568029 FLT4P35916 1363 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 COL4A5P29400 1685 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 SCN7AQ01118 1682 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 LOC100996750A0A140TA64 210 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 TLR3O15455 904 aaKnown RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 HTATSF1O43719 755 aaKnown RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 VAMP4O75379 141 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 IGHDP01880 384 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 TRIM27P14373 513 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 NOS3P29474 1203 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 TM4SF1P30408 202 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 DNAJA1P31689 397 aaKnown RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 AKAP4Q5JQC9 854 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 TMEM201Q5SNT2 666 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 MCF2L2Q86YR7 1114 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 ITPRIPQ8IWB1 547 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 RBBP8NLQ8NC74 664 aaPredicted RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 C2CD4AQ8NCU7 369 aaPredicted RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 WFDC12Q8WWY7 111 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 RTF1Q92541 710 aaKnown RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 FAM46AQ96IP4 442 aaKnown RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 FANCD2OSQ96PS1 177 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 KRTAP4-6Q9BYQ5 205 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 TAF1DQ9H5J8 278 aaPredicted RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 BRMS1Q9HCU9 246 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 DISC1Q9NRI5 854 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 ZNRF3Q9ULT6 936 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 HIF3AQ9Y2N7 669 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 POLR3KQ9Y2Y1 108 aaPredicted RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 SZT2Q5T011 3432 aa7.33□□□□□ -1.24
VPS39-209ENST00000568029 MKI67P46013 3256 aaKnown RBP7.33□□□□□ -1.24
VPS39-209ENST00000568029 PHKG2P15735 406 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 ATP2B1P20020 1258 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 CRKLP46109 303 aaKnown RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 NASPP49321 788 aaPredicted RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 CDK8P49336 464 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 RGS3P49796 1198 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 KCNMA1Q12791 1236 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 NFIXQ14938 502 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 DEFB115Q30KQ5 88 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 LRRFIP1Q32MZ4 808 aaKnown RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 TWISTNBQ3B726 338 aaPredicted RBP7.32□□□□□ -1.24
VPS39-209ENST00000568029 ZBTB37Q5TC79 503 aa7.32□□□□□ -1.24
VPS39-209ENST00000568029 TXNRD3Q86VQ6 643 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms