RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TYW1BQ6NUM6 668 aa22.61■■□□□ 1.21
CLN3-225ENST00000566824 RNF207Q6ZRF8 634 aa22.61■■□□□ 1.21
CLN3-225ENST00000566824 SEC63Q9UGP8 760 aaKnown RBP22.61■■□□□ 1.21
CLN3-225ENST00000566824 DIS3Q9Y2L1 958 aaKnown RBP22.61■■□□□ 1.21
CLN3-225ENST00000566824 PFKFB2O60825 505 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 CCND3P30281 292 aaPredicted RBP22.6■■□□□ 1.21
CLN3-225ENST00000566824 PPP2R5BQ15173 497 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 ANKRD1Q15327 319 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 WWC2Q6AWC2 1192 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 TRMT44Q8IYL2 757 aaKnown RBP22.6■■□□□ 1.21
CLN3-225ENST00000566824 RGS22Q8NE09 1264 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 SLC5A4Q9NY91 659 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 LRRC37A2A6NM11 1700 aa22.6■■□□□ 1.21
CLN3-225ENST00000566824 CCDC196A0A1B0GTZ2 297 aa22.59■■□□□ 1.21
CLN3-225ENST00000566824 SNAI1O95863 264 aaPredicted RBP22.59■■□□□ 1.21
CLN3-225ENST00000566824 CFBP00751 764 aa22.59■■□□□ 1.21
CLN3-225ENST00000566824 IFNAR1P17181 557 aa22.59■■□□□ 1.21
CLN3-225ENST00000566824 HOXA13P31271 388 aaPredicted RBP22.59■■□□□ 1.21
CLN3-225ENST00000566824 ST3GAL1Q11201 340 aa22.59■■□□□ 1.21
CLN3-225ENST00000566824 PKN1Q16512 942 aa22.59■■□□□ 1.21
CLN3-225ENST00000566824 SYTL5Q8TDW5 730 aaPredicted RBP22.59■■□□□ 1.21
CLN3-225ENST00000566824 TINF2Q9BSI4 451 aa22.59■■□□□ 1.21
CLN3-225ENST00000566824 CD2BP2O95400 341 aaKnown RBP22.58■■□□□ 1.21
CLN3-225ENST00000566824 CTDNEP1O95476 244 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 UBXN2AP68543 259 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 MFSD14CQ5VZR4 134 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 HEATR3Q7Z4Q2 680 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 SHISA4Q96DD7 197 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 TAAR1Q96RJ0 339 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 SLC26A6Q9BXS9 759 aa22.58■■□□□ 1.21
CLN3-225ENST00000566824 SLKQ9H2G2 1235 aaPredicted RBP22.58■■□□□ 1.21
CLN3-225ENST00000566824 POTEFA5A3E0 1075 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 PRPF3O43395 683 aaKnown RBP22.57■■□□□ 1.2
CLN3-225ENST00000566824 CYBAP13498 195 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 HSD17B4P51659 736 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 GHRHRQ02643 423 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 RABEP1Q15276 862 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 MAMDC4Q6UXC1 1216 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 ZNF467Q7Z7K2 595 aaPredicted RBP22.57■■□□□ 1.2
CLN3-225ENST00000566824 FRMPD3Q5JV73 1810 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 STXBP3O00186 592 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 ADAMTS3O15072 1205 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 SOX10P56693 466 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 ARMCX2Q7L311 632 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 MCF2L2Q86YR7 1114 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.57■■□□□ 1.2
CLN3-225ENST00000566824 RNF208Q9H0X6 261 aa22.57■■□□□ 1.2
CLN3-225ENST00000566824 RPTORQ8N122 1335 aa22.56■■□□□ 1.2
CLN3-225ENST00000566824 CAPN15O75808 1086 aa22.56■■□□□ 1.2
CLN3-225ENST00000566824 ALDH5A1P51649 535 aaPredicted RBP22.56■■□□□ 1.2
CLN3-225ENST00000566824 PFKFB3Q16875 520 aaPredicted RBP22.56■■□□□ 1.2
CLN3-225ENST00000566824 USP17L6PQ6QN14 398 aa22.56■■□□□ 1.2
CLN3-225ENST00000566824 GTF3C6Q969F1 213 aa22.56■■□□□ 1.2
CLN3-225ENST00000566824 KATNBL1Q9H079 304 aa22.56■■□□□ 1.2
CLN3-225ENST00000566824 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.56■■□□□ 1.2
CLN3-225ENST00000566824 BRCA2P51587 3418 aa22.55■■□□□ 1.2
CLN3-225ENST00000566824 SYNGAP1Q96PV0 1343 aa22.55■■□□□ 1.2
CLN3-225ENST00000566824 ZNF865P0CJ78 1059 aaPredicted RBP22.55■■□□□ 1.2
CLN3-225ENST00000566824 SCG2P13521 617 aa22.55■■□□□ 1.2
CLN3-225ENST00000566824 AIFM3Q96NN9 605 aa22.55■■□□□ 1.2
CLN3-225ENST00000566824 RNF26Q9BY78 433 aaPredicted RBP22.55■■□□□ 1.2
CLN3-225ENST00000566824 HMX1Q9NP08 348 aaPredicted RBP22.55■■□□□ 1.2
CLN3-225ENST00000566824 PAK6Q9NQU5 681 aaPredicted RBP22.55■■□□□ 1.2
CLN3-225ENST00000566824 LIMCH1Q9UPQ0 1083 aa22.55■■□□□ 1.2
CLN3-225ENST00000566824 MEIS2O14770 477 aa22.54■■□□□ 1.2
CLN3-225ENST00000566824 CPLX1O14810 134 aa22.54■■□□□ 1.2
CLN3-225ENST00000566824 TRAF1Q13077 416 aa22.54■■□□□ 1.2
CLN3-225ENST00000566824 UBE2SQ16763 222 aa22.54■■□□□ 1.2
CLN3-225ENST00000566824 DEFB118Q96PH6 123 aa22.54■■□□□ 1.2
CLN3-225ENST00000566824 BARHL2Q9NY43 387 aa22.54■■□□□ 1.2
CLN3-225ENST00000566824 GCOM1H8Y6P7 765 aaPredicted RBP22.53■■□□□ 1.2
CLN3-225ENST00000566824 POLR2MP0CAP2 368 aa22.53■■□□□ 1.2
CLN3-225ENST00000566824 NAPAP54920 295 aa22.53■■□□□ 1.2
CLN3-225ENST00000566824 SSRP1Q08945 709 aaKnown RBP22.53■■□□□ 1.2
CLN3-225ENST00000566824 ANO1Q5XXA6 986 aa22.53■■□□□ 1.2
CLN3-225ENST00000566824 EEPD1Q7L9B9 569 aa22.53■■□□□ 1.2
CLN3-225ENST00000566824 FCHSD1Q86WN1 690 aa22.53■■□□□ 1.2
CLN3-225ENST00000566824 MSL3Q8N5Y2 521 aaKnown RBP22.53■■□□□ 1.2
CLN3-225ENST00000566824 MORC4Q8TE76 937 aa22.53■■□□□ 1.2
CLN3-225ENST00000566824 EIF2AK2P19525 551 aaKnown RBP22.52■■□□□ 1.2
CLN3-225ENST00000566824 EN2P19622 333 aaPredicted RBP22.52■■□□□ 1.2
CLN3-225ENST00000566824 PTGS1P23219 599 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 CNGA1P29973 690 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 TMEM63BQ5T3F8 832 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 LHX8Q68G74 356 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 IL31RAQ8NI17 732 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 LENG1Q96BZ8 264 aaPredicted RBP22.52■■□□□ 1.2
CLN3-225ENST00000566824 RMDN3Q96TC7 470 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 MAF1Q9H063 256 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 PSTPIP2Q9H939 334 aa22.52■■□□□ 1.2
CLN3-225ENST00000566824 ASB14A6NK59 587 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 ADCY6O43306 1168 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 JAK2O60674 1132 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 GJB1P08034 283 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 FDPSP14324 419 aaKnown RBP22.51■■□□□ 1.19
CLN3-225ENST00000566824 EDNRBP24530 442 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 ACVR2BQ13705 512 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 CCDC83Q8IWF9 413 aa22.51■■□□□ 1.19
CLN3-225ENST00000566824 FBXO16Q8IX29 292 aaPredicted RBP22.51■■□□□ 1.19
CLN3-225ENST00000566824 NSUN7Q8NE18 718 aaKnown RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms