RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CDK17Q00537 523 aa7□□□□□ -1.29
CLN3-223ENST00000566472 UBXN1Q04323 297 aa7□□□□□ -1.29
CLN3-223ENST00000566472 PPP2R3AQ06190 1150 aa7□□□□□ -1.29
CLN3-223ENST00000566472 GABPB1Q06547 395 aaPredicted RBP7□□□□□ -1.29
CLN3-223ENST00000566472 PSMD2Q13200 908 aa7□□□□□ -1.29
CLN3-223ENST00000566472 GRB10Q13322 594 aa7□□□□□ -1.29
CLN3-223ENST00000566472 AP3B2Q13367 1082 aa7□□□□□ -1.29
CLN3-223ENST00000566472 PICALMQ13492 652 aa7□□□□□ -1.29
CLN3-223ENST00000566472 HYIQ5T013 277 aa7□□□□□ -1.29
CLN3-223ENST00000566472 DCAF8Q5TAQ9 597 aa7□□□□□ -1.29
CLN3-223ENST00000566472 STRIP1Q5VSL9 837 aa7□□□□□ -1.29
CLN3-223ENST00000566472 KRT79Q5XKE5 535 aa7□□□□□ -1.29
CLN3-223ENST00000566472 CDC42EP5Q6NZY7 148 aa7□□□□□ -1.29
CLN3-223ENST00000566472 FBXO38Q6PIJ6 1188 aa7□□□□□ -1.29
CLN3-223ENST00000566472 ARHGAP27Q6ZUM4 889 aa7□□□□□ -1.29
CLN3-223ENST00000566472 POTEDQ86YR6 584 aa7□□□□□ -1.29
CLN3-223ENST00000566472 IRF2BP1Q8IU81 584 aa7□□□□□ -1.29
CLN3-223ENST00000566472 CREBRFQ8IUR6 639 aa7□□□□□ -1.29
CLN3-223ENST00000566472 ZSCAN29Q8IWY8 852 aaPredicted RBP7□□□□□ -1.29
CLN3-223ENST00000566472 LRRC47Q8N1G4 583 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 GUF1Q8N442 669 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 GPR161Q8N6U8 529 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 CEP112Q8N8E3 955 aa7□□□□□ -1.29
CLN3-223ENST00000566472 LARP4BQ92615 738 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 RABGGTAQ92696 567 aa7□□□□□ -1.29
CLN3-223ENST00000566472 CUL5Q93034 780 aa7□□□□□ -1.29
CLN3-223ENST00000566472 MKL1Q969V6 931 aa7□□□□□ -1.29
CLN3-223ENST00000566472 CDK5RAP3Q96JB5 506 aa7□□□□□ -1.29
CLN3-223ENST00000566472 ERGIC2Q96RQ1 377 aa7□□□□□ -1.29
CLN3-223ENST00000566472 NUP88Q99567 741 aaPredicted RBP7□□□□□ -1.29
CLN3-223ENST00000566472 DNAJC7Q99615 494 aa7□□□□□ -1.29
CLN3-223ENST00000566472 DUSP9Q99956 384 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 MMTAG2Q9BU76 263 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 UBA5Q9GZZ9 404 aa7□□□□□ -1.29
CLN3-223ENST00000566472 VPS16Q9H269 839 aa7□□□□□ -1.29
CLN3-223ENST00000566472 MRPL44Q9H9J2 332 aaKnown RBP7□□□□□ -1.29
CLN3-223ENST00000566472 JMJD4Q9H9V9 463 aa7□□□□□ -1.29
CLN3-223ENST00000566472 FAM53CQ9NYF3 392 aa7□□□□□ -1.29
CLN3-223ENST00000566472 LRWD1Q9UFC0 647 aa7□□□□□ -1.29
CLN3-223ENST00000566472 CAPN11Q9UMQ6 739 aa7□□□□□ -1.29
CLN3-223ENST00000566472 MTMR7Q9Y216 660 aa7□□□□□ -1.29
CLN3-223ENST00000566472 STK24Q9Y6E0 443 aa7□□□□□ -1.29
CLN3-223ENST00000566472 FRMPD2Q68DX3 1309 aaPredicted RBP7□□□□□ -1.29
CLN3-223ENST00000566472 COL11A2P13942 1736 aaPredicted RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 ATRNL1Q5VV63 1379 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 RIMBP2O15034 1052 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 FANCGO15287 622 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CDC25AP30304 524 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 KRT9P35527 623 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 TECP42680 631 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 ERVK-24P63145 666 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 LRRC63Q05C16 580 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 TRAF1Q13077 416 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 BMS1Q14692 1282 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 NAA30Q147X3 362 aaPredicted RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 MTF1Q14872 753 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 MEA1Q16626 185 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 PTPN21Q16825 1174 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 WHAMMP3Q1A5X7 153 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CCDC96Q2M329 555 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 ERCC6LQ2NKX8 1250 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 TSR1Q2NL82 804 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 ARHGAP29Q52LW3 1261 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 FKBP15Q5T1M5 1219 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 UTP14CQ5TAP6 766 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 CC2D2BQ6DHV5 1058 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CENPPQ6IPU0 288 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 APOBEC3HQ6NTF7 200 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 RSRC2Q7L4I2 434 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 ADGRF4Q8IZF3 695 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 KRT222Q8N1A0 295 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 PROM2Q8N271 834 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 KCTD17Q8N5Z5 321 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CSGALNACT2Q8N6G5 542 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 EHBP1Q8NDI1 1231 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 OR8K1Q8NGG5 319 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 RAD54LQ92698 747 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 GOLGA1Q92805 767 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CNOT6LQ96LI5 555 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 MBOAT7Q96N66 472 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 PNMA5Q96PV4 448 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 WDR24Q96S15 920 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 TUBGCP2Q9BSJ2 902 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 DESI2Q9BSY9 194 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CARD6Q9BX69 1037 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 TTYH3Q9C0H2 523 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 NT5C3AQ9H0P0 336 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 CPVLQ9H3G5 476 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 HAUS4Q9H6D7 363 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 KANSL2Q9H9L4 492 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 VAT1LQ9HCJ6 419 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 GPCPD1Q9NPB8 672 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 BLOC1S4Q9NUP1 217 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 ZNHIT6Q9NWK9 470 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 TMEM260Q9NX78 707 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 BIN2Q9UBW5 565 aaPredicted RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 CDC23Q9UJX2 597 aa6.99□□□□□ -1.29
CLN3-223ENST00000566472 ATF5Q9Y2D1 282 aaPredicted RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 LUC7L2Q9Y383 392 aaKnown RBP6.99□□□□□ -1.29
CLN3-223ENST00000566472 RGPD3A6NKT7 1758 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms