RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ALDH5A1P51649 535 aaPredicted RBP20.12■□□□□ 0.81
CLN3-216ENST00000565316 DUSP28Q4G0W2 176 aa20.12■□□□□ 0.81
CLN3-216ENST00000565316 TMEM240Q5SV17 173 aa20.12■□□□□ 0.81
CLN3-216ENST00000565316 DGKHQ86XP1 1220 aa20.12■□□□□ 0.81
CLN3-216ENST00000565316 CDH23Q9H251 3354 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 CSF2RAP15509 400 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 ITGA7Q13683 1181 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 KIAA1211Q6ZU35 1233 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 TMEM199Q8N511 208 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 ANKS1AQ92625 1134 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 CHD9Q3L8U1 2897 aa20.11■□□□□ 0.81
CLN3-216ENST00000565316 PTPDC1A2A3K4 754 aa20.1■□□□□ 0.81
CLN3-216ENST00000565316 ZNF213O14771 459 aa20.1■□□□□ 0.81
CLN3-216ENST00000565316 GPATCH4Q5T3I0 446 aaKnown RBP20.1■□□□□ 0.81
CLN3-216ENST00000565316 SLC30A10Q6XR72 485 aa20.1■□□□□ 0.81
CLN3-216ENST00000565316 EYSQ5T1H1 3165 aa20.1■□□□□ 0.81
CLN3-216ENST00000565316 HIP1O00291 1037 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 EDNRBP24530 442 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 CYP2C18P33260 490 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 CCDC178Q5BJE1 867 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 CWC27Q6UX04 472 aaKnown RBP20.09■□□□□ 0.81
CLN3-216ENST00000565316 RNF207Q6ZRF8 634 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-216ENST00000565316 RGS22Q8NE09 1264 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 EXOC6Q8TAG9 804 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 MYLIPQ8WY64 445 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 WDR11Q9BZH6 1224 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 PPP1R12CQ9BZL4 782 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 DIAPH3Q9NSV4 1193 aa20.09■□□□□ 0.81
CLN3-216ENST00000565316 DNAJB2P25686 324 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 RPS6P62753 249 aaKnown RBP20.08■□□□□ 0.81
CLN3-216ENST00000565316 PSRC1Q6PGN9 363 aaPredicted RBP20.08■□□□□ 0.81
CLN3-216ENST00000565316 ZNF365Q70YC5 407 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 DNERQ8NFT8 737 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 MAFAQ8NHW3 353 aaPredicted RBP20.08■□□□□ 0.81
CLN3-216ENST00000565316 ZKSCAN3Q9BRR0 538 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 DSCC1Q9BVC3 393 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 MAF1Q9H063 256 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 IL23AQ9NPF7 189 aa20.08■□□□□ 0.81
CLN3-216ENST00000565316 PRUNE2Q8WUY3 3088 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 KDM4AO75164 1064 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 CALML3P27482 149 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 PSMC6P62333 389 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
CLN3-216ENST00000565316 NOC4LQ9BVI4 516 aaKnown RBP20.07■□□□□ 0.8
CLN3-216ENST00000565316 TRPV6Q9H1D0 765 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 HIPK3Q9H422 1215 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 POLR3EQ9NVU0 708 aa20.07■□□□□ 0.8
CLN3-216ENST00000565316 B4GALT4O60513 344 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 GOLGA8HP0CJ92 632 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 ACRP10323 421 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 IQCA1Q86XH1 822 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 PNMA1Q8ND90 353 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 HERVK_113Q902F9 699 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 ALDH8A1Q9H2A2 487 aaPredicted RBP20.06■□□□□ 0.8
CLN3-216ENST00000565316 UMODL1Q5DID0 1318 aa20.06■□□□□ 0.8
CLN3-216ENST00000565316 LAMA4Q16363 1823 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 NKRFO15226 690 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLN3-216ENST00000565316 FOSL2P15408 326 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 CPT1AP50416 773 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 PURAQ00577 322 aaKnown RBP20.05■□□□□ 0.8
CLN3-216ENST00000565316 PDE4DQ08499 809 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 GRIN2CQ14957 1233 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 ENAHQ8N8S7 591 aaPredicted RBP20.05■□□□□ 0.8
CLN3-216ENST00000565316 TIFAQ96CG3 184 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 ZSCAN10Q96SZ4 725 aaPredicted RBP20.05■□□□□ 0.8
CLN3-216ENST00000565316 MPHOSPH6Q99547 160 aaKnown RBP20.05■□□□□ 0.8
CLN3-216ENST00000565316 UBA5Q9GZZ9 404 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 CPVLQ9H3G5 476 aa20.05■□□□□ 0.8
CLN3-216ENST00000565316 B4E1Z4 1266 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 IMMTQ16891 758 aaKnown RBP20.04■□□□□ 0.8
CLN3-216ENST00000565316 SCFD2Q8WU76 684 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 PBX4Q9BYU1 374 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 ZNF576Q9H609 170 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 KAT14Q9H8E8 782 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 ZSWIM5Q9P217 1185 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 CTNNA3Q9UI47 895 aa20.04■□□□□ 0.8
CLN3-216ENST00000565316 B4DLN1 442 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 MRPL12P52815 198 aaKnown RBP20.03■□□□□ 0.8
CLN3-216ENST00000565316 PPP2R5BQ15173 497 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 ASPRV1Q53RT3 343 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 ADGRF4Q8IZF3 695 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 OR6J1Q8NGC5 347 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 VWCEQ96DN2 955 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 MTG1Q9BT17 334 aaPredicted RBP20.03■□□□□ 0.8
CLN3-216ENST00000565316 COL25A1Q9BXS0 654 aaPredicted RBP20.03■□□□□ 0.8
CLN3-216ENST00000565316 WNT8AQ9H1J5 351 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 ABCB11O95342 1321 aa20.03■□□□□ 0.8
CLN3-216ENST00000565316 A6NJR5 290 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 GRXCR1A8MXD5 290 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 FGBP02675 491 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 PBX2P40425 430 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 CDC37Q16543 378 aaPredicted RBP20.02■□□□□ 0.8
CLN3-216ENST00000565316 USH1GQ495M9 461 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 KRT23Q9C075 422 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 CXXC1Q9P0U4 656 aaPredicted RBP20.02■□□□□ 0.8
CLN3-216ENST00000565316 SPTBN5Q9NRC6 3674 aaKnown RBP20.02■□□□□ 0.8
CLN3-216ENST00000565316 TNKSO95271 1327 aa20.02■□□□□ 0.8
CLN3-216ENST00000565316 KPNA6O60684 536 aa20.02■□□□□ 0.79
CLN3-216ENST00000565316 MYL3P08590 195 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms