RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 MSL3P1P0C860 447 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 COPS2P61201 443 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 TBL3Q12788 808 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 GSDMAQ96QA5 445 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 SEC63Q9UGP8 760 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 PCDHA7Q9UN72 937 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 L1RE1Q9UN81 338 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 SOWAHDA6NJG2 315 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 RGS2P41220 211 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 BEND3Q5T5X7 828 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 WDR60Q8WVS4 1066 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ELAC2Q9BQ52 826 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 MAGEF1Q9HAY2 307 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ATAD3AQ9NVI7 634 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ATP11BQ9Y2G3 1177 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 SYCE1LA8MT33 242 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 POTEEQ6S8J3 1075 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 VPS37DQ86XT2 251 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 PARD3BQ8TEW8 1205 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 SLC26A6Q9BXS9 759 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ASIC3Q9UHC3 531 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 RPAP1Q9BWH6 1393 aaPredicted RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 PPP6R2O75170 966 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ESRRAP11474 423 aaPredicted RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 ASIC1P78348 528 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 PNOCQ13519 176 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 KRT81Q14533 505 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 PATL1Q86TB9 770 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 CCDC105Q8IYK2 499 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 CSGALNACT2Q8N6G5 542 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 NELFBQ8WX92 580 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 RILPQ96NA2 401 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 KRT12Q99456 494 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ZHX3Q9H4I2 956 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 TIMMDC1Q9NPL8 285 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 MRPL40Q9NQ50 206 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 ZFP69BQ9UJL9 534 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 NQO1P15559 274 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 RBL2Q08999 1139 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 R3HDM1Q15032 1099 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 PPP2R5BQ15173 497 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 RCN1Q15293 331 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ZCWPW2Q504Y3 356 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 TMEM67Q5HYA8 995 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ZNF554Q86TJ5 538 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 NFU1Q9UMS0 254 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 SHANK2Q9UPX8 1470 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 GRIN1Q05586 938 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 MORC3Q14149 939 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 PITPNM3Q9BZ71 974 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 SLC12A5Q9H2X9 1139 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 DCLRE1BQ9H816 532 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 ZNF287Q9HBT7 754 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 POTEB3A0JP26 581 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 H0Y3Z8 333 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 POTEBQ6S5H4 581 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 CDC5LQ99459 802 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 MAP2K7O14733 419 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 FOXP2O15409 715 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 POLR2DO15514 142 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 KRT6AP02538 564 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 KRT6BP04259 564 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 MARK3P27448 753 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 PLCB3Q01970 1234 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 RAPGEF1Q13905 1077 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 CCDC153Q494R4 210 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 TEDDM1Q5T9Z0 273 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 ARMCX5Q6P1M9 558 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 FUKQ8N0W3 1084 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 C2CD2Q9Y426 696 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 GMEB1Q9Y692 573 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 ARHGAP5Q13017 1502 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 KCNK3O14649 394 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 XPO1O14980 1071 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 LCA5LO95447 670 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 MYL1P05976 194 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 NAPBQ9H115 298 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 SLC4A7Q9Y6M7 1214 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 KAT6BQ8WYB5 2073 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 CCNHP51946 323 aaPredicted RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 MRPS15P82914 257 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 TSHZ3Q63HK5 1081 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 MICU3Q86XE3 530 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 PASD1Q8IV76 773 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 DDX54Q8TDD1 881 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 WDR24Q96S15 920 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 GRIN2AQ12879 1464 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 IFIT3O14879 490 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 CCDC22O60826 627 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 EPB41P11171 864 aaKnown RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 IFNAR2P48551 515 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 NDUFA8P51970 172 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 C2CD5Q86YS7 1000 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 DIABLOQ9NR28 239 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 MINK1Q8N4C8 1332 aaPredicted RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 GAPVD1Q14C86 1478 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 ZNF839A8K0R7 811 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 HGSO14964 777 aaPredicted RBP6.8□□□□□ -1.32
CLK3-212ENST00000563418 AGTP01019 485 aa6.8□□□□□ -1.32
CLK3-212ENST00000563418 C16orf71Q8IYS4 520 aaPredicted RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms