RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 AXDND1Q5T1B0 1012 aaPredicted RBP15.87■□□□□ 0.13
CLK3-209ENST00000562670 JAKMIP3Q5VZ66 844 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 PPP4R3AQ6IN85 833 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 GPAT2Q6NUI2 795 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLK3-209ENST00000562670 KRI1Q8N9T8 703 aaKnown RBP15.87■□□□□ 0.13
CLK3-209ENST00000562670 ZNF579Q8NAF0 562 aaKnown RBP15.87■□□□□ 0.13
CLK3-209ENST00000562670 CLEC4DQ8WXI8 215 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 FERMT2Q96AC1 680 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 MS4A4AQ96JQ5 239 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 AGBL1Q96MI9 1066 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 ANP32EQ9BTT0 268 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 ANO3Q9BYT9 981 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 EHMT1Q9H9B1 1298 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 PCDHA7Q9UN72 937 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 FRMPD4Q14CM0 1322 aa15.87■□□□□ 0.13
CLK3-209ENST00000562670 FAM237AA0A1B0GTK4 181 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 SPDYE3A6NKU9 549 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 WNT7AO00755 349 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 PRPHP41219 470 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 USP11P51784 963 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 HUNKP57058 714 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 TMEM132BQ14DG7 1078 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 USP17L6PQ6QN14 398 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 ANKRD23Q86SG2 305 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 HHIPL1Q96JK4 782 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 ASCC2Q9H1I8 757 aaPredicted RBP15.86■□□□□ 0.13
CLK3-209ENST00000562670 RAVER2Q9HCJ3 691 aaKnown RBP15.86■□□□□ 0.13
CLK3-209ENST00000562670 ZCCHC17Q9NP64 241 aaKnown RBP15.86■□□□□ 0.13
CLK3-209ENST00000562670 TMEM260Q9NX78 707 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 FBXO2Q9UK22 296 aaPredicted RBP15.86■□□□□ 0.13
CLK3-209ENST00000562670 RABGAP1Q9Y3P9 1069 aa15.86■□□□□ 0.13
CLK3-209ENST00000562670 SRPRBQ9Y5M8 271 aaKnown RBP15.86■□□□□ 0.13
CLK3-209ENST00000562670 CYP3A7-CYP3A51PA0A087WV96 503 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 TESPA1A2RU30 521 aaPredicted RBP15.85■□□□□ 0.13
CLK3-209ENST00000562670 CYP3A4P08684 503 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 OSBPP22059 807 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 CYP3A7P24462 503 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 HERVK_113P62684 666 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 SAPCD2Q86UD0 394 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 C4orf32Q8N8J7 132 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 MBOAT7Q96N66 472 aa15.85■□□□□ 0.13
CLK3-209ENST00000562670 NEMFO60524 1076 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 TOMM70O94826 608 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 ALAS1P13196 640 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 CMA1P23946 247 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 CIITAP33076 1130 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 FSTL1Q12841 308 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 PTGDRQ13258 359 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 SNRNP48Q6IEG0 339 aaKnown RBP15.84■□□□□ 0.13
CLK3-209ENST00000562670 SAMD1Q6SPF0 538 aaPredicted RBP15.84■□□□□ 0.13
CLK3-209ENST00000562670 RASAL3Q86YV0 1011 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 RIOX2Q8IUF8 465 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 CPXCR1Q8N123 301 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 CHST13Q8NET6 341 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 MRPS27Q92552 414 aaKnown RBP15.84■□□□□ 0.13
CLK3-209ENST00000562670 SYAP1Q96A49 352 aaPredicted RBP15.84■□□□□ 0.13
CLK3-209ENST00000562670 TRERF1Q96PN7 1200 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 P2RX7Q99572 595 aaKnown RBP15.84■□□□□ 0.13
CLK3-209ENST00000562670 RNF146Q9NTX7 359 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 FBXO40Q9UH90 709 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 TLL2Q9Y6L7 1015 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 RPTORQ8N122 1335 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 MYH7BA7E2Y1 1941 aa15.84■□□□□ 0.13
CLK3-209ENST00000562670 CCL15-CCL14A0A0B4J2E2 113 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 NFIBO00712 420 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 EDIL3O43854 480 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 CFBP00751 764 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 TAL1P17542 331 aaPredicted RBP15.83■□□□□ 0.12
CLK3-209ENST00000562670 ATP2B1P20020 1258 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 MCM7P33993 719 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 STAT3P40763 770 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 ARHGAP4P98171 946 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 ZNF174Q15697 407 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 CCL15Q16663 113 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 LETM2Q2VYF4 491 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 BRI3BPQ8WY22 251 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 ACAD9Q9H845 621 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 DDX19AQ9NUU7 478 aaKnown RBP15.83■□□□□ 0.12
CLK3-209ENST00000562670 SMCHD1A6NHR9 2005 aa15.83■□□□□ 0.12
CLK3-209ENST00000562670 MANSC4A6NHS7 340 aaPredicted RBP15.82■□□□□ 0.12
CLK3-209ENST00000562670 CCNT1O60563 726 aaKnown RBP15.82■□□□□ 0.12
CLK3-209ENST00000562670 SLC25A27O95847 323 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 SLC10A3P09131 477 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 MARCKSP29966 332 aaPredicted RBP15.82■□□□□ 0.12
CLK3-209ENST00000562670 FAM160A1Q05DH4 1040 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 MUM1L1Q5H9M0 696 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 RESP18Q5W5W9 173 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 RGMBQ6NW40 437 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 POTEEQ6S8J3 1075 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 CCDC73Q6ZRK6 1079 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 SPATC1LQ9H0A9 340 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 HPSEQ9Y251 543 aa15.82■□□□□ 0.12
CLK3-209ENST00000562670 BTBD19C9JJ37 291 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 PFASO15067 1338 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 TBX3O15119 743 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 CNMDO75829 334 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 OR52Z1P0C646 297 aa15.81■□□□□ 0.12
CLK3-209ENST00000562670 HOXA13P31271 388 aaPredicted RBP15.81■□□□□ 0.12
CLK3-209ENST00000562670 LONP1P36776 959 aaKnown RBP15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms