RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 OPLAHO14841 1288 aa19.34■□□□□ 0.69
CLK3-207ENST00000562389 CAPN2P17655 700 aa19.34■□□□□ 0.69
CLK3-207ENST00000562389 PDIA3P30101 505 aaKnown RBP19.34■□□□□ 0.69
CLK3-207ENST00000562389 PWP2Q15269 919 aaKnown RBP19.34■□□□□ 0.69
CLK3-207ENST00000562389 CCDC82Q8N4S0 544 aa19.34■□□□□ 0.69
CLK3-207ENST00000562389 SAMD3Q8N6K7 520 aa19.34■□□□□ 0.69
CLK3-207ENST00000562389 TRPV1Q8NER1 839 aa19.34■□□□□ 0.69
CLK3-207ENST00000562389 U2AF1L4Q8WU68 220 aaKnown RBP19.34■□□□□ 0.69
CLK3-207ENST00000562389 ZNF274Q96GC6 653 aaPredicted RBP19.34■□□□□ 0.69
CLK3-207ENST00000562389 ADD3Q9UEY8 706 aaKnown RBP19.34■□□□□ 0.69
CLK3-207ENST00000562389 ASB14A6NK59 587 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 SGPL1O95470 568 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 SNAI1O95863 264 aaPredicted RBP19.33■□□□□ 0.68
CLK3-207ENST00000562389 CALML3P27482 149 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 ADD1P35611 737 aaKnown RBP19.33■□□□□ 0.68
CLK3-207ENST00000562389 RBM25P49756 843 aaKnown RBP19.33■□□□□ 0.68
CLK3-207ENST00000562389 ARMCX2Q7L311 632 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 DNERQ8NFT8 737 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 DEFB118Q96PH6 123 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 C22orf23Q9BZE7 217 aa19.33■□□□□ 0.68
CLK3-207ENST00000562389 MAP3K20Q9NYL2 800 aaKnown RBP19.33■□□□□ 0.68
CLK3-207ENST00000562389 EN2P19622 333 aaPredicted RBP19.32■□□□□ 0.68
CLK3-207ENST00000562389 ALDH5A1P51649 535 aaPredicted RBP19.32■□□□□ 0.68
CLK3-207ENST00000562389 HSD17B4P51659 736 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 ANKRD1Q15327 319 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 MORC4Q8TE76 937 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 TBC1D5Q92609 795 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 SHISA4Q96DD7 197 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 PURBQ96QR8 312 aaKnown RBP19.32■□□□□ 0.68
CLK3-207ENST00000562389 CRISPLD2Q9H0B8 497 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.32■□□□□ 0.68
CLK3-207ENST00000562389 CNPY2Q9Y2B0 182 aa19.32■□□□□ 0.68
CLK3-207ENST00000562389 SEPT4O43236 478 aa19.31■□□□□ 0.68
CLK3-207ENST00000562389 MSCO60682 206 aa19.31■□□□□ 0.68
CLK3-207ENST00000562389 ZNF865P0CJ78 1059 aaPredicted RBP19.31■□□□□ 0.68
CLK3-207ENST00000562389 RGS19P49795 217 aa19.31■□□□□ 0.68
CLK3-207ENST00000562389 AK2P54819 239 aa19.31■□□□□ 0.68
CLK3-207ENST00000562389 PRAMEF19Q5SWL8 479 aa19.31■□□□□ 0.68
CLK3-207ENST00000562389 SYTL5Q8TDW5 730 aaPredicted RBP19.31■□□□□ 0.68
CLK3-207ENST00000562389 ABHD16BQ9H3Z7 469 aa19.31■□□□□ 0.68
CLK3-207ENST00000562389 UPF2Q9HAU5 1272 aaKnown RBP19.31■□□□□ 0.68
CLK3-207ENST00000562389 DDX20Q9UHI6 824 aaKnown RBP19.31■□□□□ 0.68
CLK3-207ENST00000562389 hCG_1642624A0A1W2PR95 340 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 hCG_1984214I3L0E3 225 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 CFBP00751 764 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 CNGA1P29973 690 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 NEK4P51957 841 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 CCT2P78371 535 aaKnown RBP19.3■□□□□ 0.68
CLK3-207ENST00000562389 NTRK3Q16288 839 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 LHX8Q68G74 356 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 ZNF713Q8N859 430 aaPredicted RBP19.3■□□□□ 0.68
CLK3-207ENST00000562389 KIF2CQ99661 725 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 LARP6Q9BRS8 491 aaKnown RBP19.3■□□□□ 0.68
CLK3-207ENST00000562389 KATNBL1Q9H079 304 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 COL20A1Q9P218 1284 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 BRCA2P51587 3418 aa19.3■□□□□ 0.68
CLK3-207ENST00000562389 IFNAR1P17181 557 aa19.29■□□□□ 0.68
CLK3-207ENST00000562389 EDNRBP24530 442 aa19.29■□□□□ 0.68
CLK3-207ENST00000562389 ACVR2BQ13705 512 aa19.29■□□□□ 0.68
CLK3-207ENST00000562389 MPHOSPH6Q99547 160 aaKnown RBP19.29■□□□□ 0.68
CLK3-207ENST00000562389 NCOA5Q9HCD5 579 aaKnown RBP19.29■□□□□ 0.68
CLK3-207ENST00000562389 RBM27Q9P2N5 1060 aaKnown RBP19.29■□□□□ 0.68
CLK3-207ENST00000562389 ZHX1Q9UKY1 873 aaPredicted RBP19.29■□□□□ 0.68
CLK3-207ENST00000562389 OGDHLQ9ULD0 1010 aa19.29■□□□□ 0.68
CLK3-207ENST00000562389 TPCN1Q9ULQ1 816 aa19.29■□□□□ 0.68
CLK3-207ENST00000562389 V9GY48 417 aaPredicted RBP19.29■□□□□ 0.68
CLK3-207ENST00000562389 B4DLN1 442 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 GCOM1H8Y6P7 765 aaPredicted RBP19.28■□□□□ 0.68
CLK3-207ENST00000562389 PRPF3O43395 683 aaKnown RBP19.28■□□□□ 0.68
CLK3-207ENST00000562389 TFRCP02786 760 aaKnown RBP19.28■□□□□ 0.68
CLK3-207ENST00000562389 POLR2MP0CAP2 368 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 AKR1A1P14550 325 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 MRPL12P52815 198 aaKnown RBP19.28■□□□□ 0.68
CLK3-207ENST00000562389 WWC2Q6AWC2 1192 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 PPP1R18Q6NYC8 613 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 HEATR3Q7Z4Q2 680 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 TAAR1Q96RJ0 339 aa19.28■□□□□ 0.68
CLK3-207ENST00000562389 RNF26Q9BY78 433 aaPredicted RBP19.28■□□□□ 0.68
CLK3-207ENST00000562389 HOXA13P31271 388 aaPredicted RBP19.27■□□□□ 0.68
CLK3-207ENST00000562389 STK3Q13188 491 aa19.27■□□□□ 0.68
CLK3-207ENST00000562389 ANKLE1Q8NAG6 615 aa19.27■□□□□ 0.68
CLK3-207ENST00000562389 NSUN6Q8TEA1 469 aaKnown RBP19.27■□□□□ 0.68
CLK3-207ENST00000562389 GPKOWQ92917 476 aaPredicted RBP eCLIP19.27■□□□□ 0.68
CLK3-207ENST00000562389 RMDN3Q96TC7 470 aa19.27■□□□□ 0.68
CLK3-207ENST00000562389 BACH2Q9BYV9 841 aa19.27■□□□□ 0.68
CLK3-207ENST00000562389 VTA1Q9NP79 307 aa19.27■□□□□ 0.68
CLK3-207ENST00000562389 FAM184BQ9ULE4 1060 aa19.27■□□□□ 0.68
CLK3-207ENST00000562389 PIK3CDO00329 1044 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 PFKFB2O60825 505 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 SCRN1Q12765 414 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 PFKFB3Q16875 520 aaPredicted RBP19.26■□□□□ 0.67
CLK3-207ENST00000562389 CUL5Q93034 780 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 PHKBQ93100 1093 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 IWS1Q96ST2 819 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 SLKQ9H2G2 1235 aaPredicted RBP19.26■□□□□ 0.67
CLK3-207ENST00000562389 PXMP2Q9NR77 195 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 BARHL2Q9NY43 387 aa19.26■□□□□ 0.67
CLK3-207ENST00000562389 DDX49Q9Y6V7 483 aaKnown RBP19.26■□□□□ 0.67
CLK3-207ENST00000562389 KIAA1217Q5T5P2 1943 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 STXBP3O00186 592 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms