RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 AGBL1Q96MI9 1066 aa11.72□□□□□ -0.53
USP3-219ENST00000561326 RAVER2Q9HCJ3 691 aaKnown RBP11.72□□□□□ -0.53
USP3-219ENST00000561326 TMEM260Q9NX78 707 aa11.72□□□□□ -0.53
USP3-219ENST00000561326 AGTPBP1Q9UPW5 1226 aa11.72□□□□□ -0.53
USP3-219ENST00000561326 SRPRBQ9Y5M8 271 aaKnown RBP11.72□□□□□ -0.53
USP3-219ENST00000561326 ZNF536O15090 1300 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 ATP2A1O14983 1001 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 ADAMTS3O15072 1205 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 ATP2C1P98194 919 aaPredicted RBP11.71□□□□□ -0.53
USP3-219ENST00000561326 FMR1Q06787 632 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP3-219ENST00000561326 LETM2Q2VYF4 491 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 PPP4R3AQ6IN85 833 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 FSIP1Q8NA03 581 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 MRPS27Q92552 414 aaKnown RBP11.71□□□□□ -0.53
USP3-219ENST00000561326 WNK4Q96J92 1243 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 TRERF1Q96PN7 1200 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 FAM13BQ9NYF5 915 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 PNMA3Q9UL41 463 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 RABGAP1Q9Y3P9 1069 aa11.71□□□□□ -0.53
USP3-219ENST00000561326 MARCH6O60337 910 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 NEMFO60524 1076 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 ZBTB48P10074 688 aaPredicted RBP11.7□□□□□ -0.54
USP3-219ENST00000561326 STAT3P40763 770 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 PRPHP41219 470 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 FAM160A1Q05DH4 1040 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 PLS1Q14651 629 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 AXDND1Q5T1B0 1012 aaPredicted RBP11.7□□□□□ -0.54
USP3-219ENST00000561326 TREML2Q5T2D2 321 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 CCDC183Q5T5S1 534 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 CST9Q5W186 159 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 MOXD1Q6UVY6 613 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 DTHD1Q6ZMT9 781 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 FCHSD1Q86WN1 690 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
USP3-219ENST00000561326 TEX13BQ9BXU2 312 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 ANO3Q9BYT9 981 aa11.7□□□□□ -0.54
USP3-219ENST00000561326 GZF1Q9H116 711 aaPredicted RBP11.7□□□□□ -0.54
USP3-219ENST00000561326 DDX19AQ9NUU7 478 aaKnown RBP11.7□□□□□ -0.54
USP3-219ENST00000561326 SPDYE16A6NNV3 312 aaPredicted RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 CTAGE5O15320 804 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 KINO60870 393 aaKnown RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 HOXA13P31271 388 aaPredicted RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 COPB2P35606 906 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 ZNF76P36508 570 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 SREBF1P36956 1147 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 HUNKP57058 714 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 SNRNP48Q6IEG0 339 aaKnown RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 LBX2Q6XYB7 198 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 SMC1BQ8NDV3 1235 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 CCDC34Q96HJ3 373 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 P2RX7Q99572 595 aaKnown RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 PYM1Q9BRP8 204 aaKnown RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 ASCC2Q9H1I8 757 aaPredicted RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 HOMER2Q9NSB8 354 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 DACT1Q9NYF0 836 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 FBXO40Q9UH90 709 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 FBXO2Q9UK22 296 aaPredicted RBP11.69□□□□□ -0.54
USP3-219ENST00000561326 SLC45A1Q9Y2W3 748 aa11.69□□□□□ -0.54
USP3-219ENST00000561326 CYP3A7-CYP3A51PA0A087WV96 503 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 A0A1B0GVL5 298 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 VWA3AA6NCI4 1184 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 OPLAHO14841 1288 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 CYP3A4P08684 503 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 OR52Z1P0C646 297 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 LIG1P18858 919 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 CYP3A7P24462 503 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 GJA5P36382 358 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 LONP1P36776 959 aaKnown RBP11.68□□□□□ -0.54
USP3-219ENST00000561326 TXLNAP40222 546 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 HSD17B4P51659 736 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 HERVK_113P62684 666 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 ARHGAP4P98171 946 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 GHRHRQ02643 423 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 TMEM132BQ14DG7 1078 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 CALCRLQ16602 461 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 TMEM266Q2M3C6 531 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 SPRYD7Q5W111 196 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 RESP18Q5W5W9 173 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 RNF207Q6ZRF8 634 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 C4orf32Q8N8J7 132 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 CHST13Q8NET6 341 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 REPS2Q8NFH8 660 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 CLEC4DQ8WXI8 215 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 TBC1D5Q92609 795 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 CLIC6Q96NY7 704 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 SDF4Q9BRK5 362 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 RAB34Q9BZG1 259 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 NUP62CLQ9H1M0 184 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 RNF146Q9NTX7 359 aa11.68□□□□□ -0.54
USP3-219ENST00000561326 DDX25Q9UHL0 483 aaKnown RBP11.68□□□□□ -0.54
USP3-219ENST00000561326 ZNF214Q9UL59 606 aaPredicted RBP11.68□□□□□ -0.54
USP3-219ENST00000561326 KIAA1217Q5T5P2 1943 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 CCL15-CCL14A0A0B4J2E2 113 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 WNT7AO00755 349 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 NR1I2O75469 434 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 ZNF202O95125 648 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 SLC25A27O95847 323 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 SYKP43405 635 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 ZNF157P51786 506 aaPredicted RBP11.67□□□□□ -0.54
USP3-219ENST00000561326 MOGSQ13724 837 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms