RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PCDHA8Q9Y5H6 950 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 RASSF10A6NK89 507 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 F5H6K3 240 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 CXCL11O14625 94 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 IKBKBO14920 756 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 KLRC3Q07444 240 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 DEFB115Q30KQ5 88 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 RASGRP2Q7LDG7 609 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 GMCL1P1Q8NEA9 526 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 CCDC102AQ96A19 550 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 ZMYND12Q9H0C1 365 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 RIOX1Q9H6W3 641 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 C6orf50Q9HD87 102 aa20.18■□□□□ 0.82
SNX1-208ENST00000559844 WNT7AO00755 349 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 ACTN4O43707 911 aaKnown RBP20.17■□□□□ 0.82
SNX1-208ENST00000559844 NDUFB10O96000 172 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 SNHG28P0DPA3 235 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 GNA11P29992 359 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 NAPAP54920 295 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 SNAPC2Q13487 334 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 KIAA1755Q5JYT7 1200 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 CYP4F22Q6NT55 531 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 TYW1BQ6NUM6 668 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 EMILIN3Q9NT22 766 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 PCDHA5Q9Y5H7 936 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 A0A0G2JLL6 359 aaPredicted RBP20.17■□□□□ 0.82
SNX1-208ENST00000559844 FAM155AB1AL88 458 aaPredicted RBP20.17■□□□□ 0.82
SNX1-208ENST00000559844 SLFN13Q68D06 897 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 KRT25Q7Z3Z0 450 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 PRRT2Q7Z6L0 340 aaPredicted RBP20.17■□□□□ 0.82
SNX1-208ENST00000559844 TRIML1Q8N9V2 468 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 TMOD4Q9NZQ9 345 aa20.17■□□□□ 0.82
SNX1-208ENST00000559844 MCM7P33993 719 aa20.16■□□□□ 0.82
SNX1-208ENST00000559844 NT5DC1Q5TFE4 455 aa20.16■□□□□ 0.82
SNX1-208ENST00000559844 SYMPKQ92797 1274 aaKnown RBP20.16■□□□□ 0.82
SNX1-208ENST00000559844 SMARCE1Q969G3 411 aa20.16■□□□□ 0.82
SNX1-208ENST00000559844 DACH1Q9UI36 760 aa20.16■□□□□ 0.82
SNX1-208ENST00000559844 ESYT2A0FGR8 921 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 VWA3AA6NCI4 1184 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 GTF2A2P52657 109 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 SH3D19Q5HYK7 790 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 GADL1Q6ZQY3 521 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 LPAR1Q92633 364 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 ADAMTS3O15072 1205 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 SMC2O95347 1197 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 SLFN14P0C7P3 912 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 VCAM1P19320 739 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 LONP1P36776 959 aaKnown RBP20.15■□□□□ 0.82
SNX1-208ENST00000559844 SLC1A4P43007 532 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 USP49Q70CQ1 688 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 HOMER1Q86YM7 354 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 PDILTQ8N807 584 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 EPSTI1Q96J88 318 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 MS4A4AQ96JQ5 239 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 C12orf42Q96LP6 360 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 PIGSQ96S52 555 aa20.15■□□□□ 0.82
SNX1-208ENST00000559844 NUP88Q99567 741 aaPredicted RBP20.15■□□□□ 0.82
SNX1-208ENST00000559844 TTC12Q9H892 705 aaPredicted RBP20.15■□□□□ 0.82
SNX1-208ENST00000559844 SMCO2A6NFE2 343 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 LAD1O00515 517 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 CETPP11597 493 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 HSPA6P17066 643 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 SARSP49591 514 aaKnown RBP20.14■□□□□ 0.81
SNX1-208ENST00000559844 CCDC96Q2M329 555 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.14■□□□□ 0.81
SNX1-208ENST00000559844 DHX58Q96C10 678 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 GMCL1Q96IK5 515 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 CAPNS2Q96L46 248 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 ZNF830Q96NB3 372 aaPredicted RBP20.14■□□□□ 0.81
SNX1-208ENST00000559844 CCL15-CCL14A0A0B4J2E2 113 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 ZNF543Q08ER8 600 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 CCL15Q16663 113 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 FAM83BQ5T0W9 1011 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 GPATCH4Q5T3I0 446 aaKnown RBP20.14■□□□□ 0.81
SNX1-208ENST00000559844 C4orf32Q8N8J7 132 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 MLKLQ8NB16 471 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 RASGRP4Q8TDF6 673 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 CPVLQ9H3G5 476 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 VAT1LQ9HCJ6 419 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 MAN1B1Q9UKM7 699 aa20.14■□□□□ 0.81
SNX1-208ENST00000559844 FRMPD2Q68DX3 1309 aaPredicted RBP20.13■□□□□ 0.81
SNX1-208ENST00000559844 PARP14Q460N5 1801 aa20.13■□□□□ 0.81
SNX1-208ENST00000559844 BAZ2BQ9UIF8 2168 aaKnown RBP20.13■□□□□ 0.81
SNX1-208ENST00000559844 FOXN1O15353 648 aa20.13■□□□□ 0.81
SNX1-208ENST00000559844 MYL5Q02045 173 aa20.13■□□□□ 0.81
SNX1-208ENST00000559844 NONOQ15233 471 aaKnown RBP eCLIP20.13■□□□□ 0.81
SNX1-208ENST00000559844 ISM2Q6H9L7 571 aa20.13■□□□□ 0.81
SNX1-208ENST00000559844 FASTKD5Q7L8L6 764 aaKnown RBP20.13■□□□□ 0.81
SNX1-208ENST00000559844 PROCA1Q8NCQ7 364 aaPredicted RBP20.13■□□□□ 0.81
SNX1-208ENST00000559844 DCAF4Q8WV16 495 aa20.13■□□□□ 0.81
SNX1-208ENST00000559844 UBA5Q9GZZ9 404 aa20.13■□□□□ 0.81
SNX1-208ENST00000559844 WDR46O15213 610 aaKnown RBP20.12■□□□□ 0.81
SNX1-208ENST00000559844 OFD1O75665 1012 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 BMP3P12645 472 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 TXLNAP40222 546 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 MOGSQ13724 837 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 NCAPHQ15003 741 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 TREML2Q5T2D2 321 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 PPP1R18Q6NYC8 613 aa20.12■□□□□ 0.81
SNX1-208ENST00000559844 KCTD1Q719H9 257 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms