RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 DNAJC7Q99615 494 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 CAPN11Q9UMQ6 739 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 POTEMA6NI47 508 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 RHOXF2BP0C7M4 288 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 SRGNP10124 158 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 PLCG2P16885 1265 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 MTIF2P46199 727 aaKnown RBP11.24□□□□□ -0.61
LRRC28-216ENST00000559819 CALCRLQ16602 461 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 UBE2SQ16763 222 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 NCAPH2Q6IBW4 605 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 DYMQ7RTS9 669 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 PCMTD1Q96MG8 357 aaPredicted RBP11.24□□□□□ -0.61
LRRC28-216ENST00000559819 NUDT12Q9BQG2 462 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 RHOXF2Q9BQY4 288 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 SEMA6BQ9H3T3 888 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 CUEDC2Q9H467 287 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 RIOX1Q9H6W3 641 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 ZCCHC17Q9NP64 241 aaKnown RBP11.24□□□□□ -0.61
LRRC28-216ENST00000559819 BLOC1S4Q9NUP1 217 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 MTMR4Q9NYA4 1195 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 HDAC6Q9UBN7 1215 aa11.24□□□□□ -0.61
LRRC28-216ENST00000559819 MYMKA6NI61 221 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 ENC1O14682 589 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 TTBK2Q6IQ55 1244 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 FBXO41Q8TF61 875 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 FAM163AQ96GL9 167 aaPredicted RBP11.23□□□□□ -0.61
LRRC28-216ENST00000559819 TTYH3Q9C0H2 523 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 ARFGAP3Q9NP61 516 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 ERICH4A6NGS2 130 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 KIF20AO95235 890 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 NOVP48745 357 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 DNM2P50570 870 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 TBC1D8BQ0IIM8 1120 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 LONRF2Q1L5Z9 754 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 MIIPQ5JXC2 388 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 CERS5Q8N5B7 392 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 CALML4Q96GE6 196 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 MTMR9Q96QG7 549 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 NOC4LQ9BVI4 516 aaKnown RBP11.23□□□□□ -0.61
LRRC28-216ENST00000559819 FUT8Q9BYC5 575 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 MAGEF1Q9HAY2 307 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 LRWD1Q9UFC0 647 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 MYH1P12882 1939 aa11.23□□□□□ -0.61
LRRC28-216ENST00000559819 RCCD1A6NED2 376 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 PPP1R11O60927 126 aaPredicted RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 ERCC3P19447 782 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 TRIM21P19474 475 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 OAS2P29728 719 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SLC16A2P36021 539 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 TNNI2P48788 182 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SCNN1DP51172 638 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 ADCY7P51828 1080 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 AMPD2Q01433 879 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 ATP2B2Q01814 1243 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 KCNK18Q7Z418 384 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 CERS3Q8IU89 383 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 NOA1Q8NC60 698 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 GLIS3Q8NEA6 775 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 NOC3LQ8WTT2 800 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 CCDC47Q96A33 483 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 BBOX1O75936 387 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 GABPAQ06546 454 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 GJD4Q96KN9 370 aaPredicted RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 UBXN6Q9BZV1 441 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SUGCTQ9HAC7 445 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 MYO6Q9UM54 1294 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 BICDL2A1A5D9 508 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SRGAP2O75044 1071 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 ATP1A1P05023 1023 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SMC1AQ14683 1233 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 LRRC41Q15345 812 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 ECM1Q16610 540 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 DOK7Q18PE1 504 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 TSR1Q2NL82 804 aaKnown RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 CCDC122Q5T0U0 273 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SV2BQ7L1I2 683 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 SLF2Q8IX21 1173 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 TBC1D22AQ8WUA7 517 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 LACRTQ9GZZ8 138 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 JMJD4Q9H9V9 463 aa11.22□□□□□ -0.61
LRRC28-216ENST00000559819 RNF216Q9NWF9 866 aaPredicted RBP11.22□□□□□ -0.61
LRRC28-216ENST00000559819 IGKV6D-41A0A0C4DH26 115 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 ESYT2A0FGR8 921 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CTAGE15A4D2H0 777 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 PPEF1O14829 653 aaPredicted RBP11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CTAGE8P0CG41 777 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 SMARCA1P28370 1054 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CYP27A1Q02318 531 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CNNM4Q6P4Q7 775 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CTAGE6Q86UF2 777 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CTAGE4Q8IX94 777 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 SEPT12Q8IYM1 358 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 ADGRF4Q8IZF3 695 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 SNX29Q8TEQ0 813 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 LARP4BQ92615 738 aaKnown RBP11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CDK5RAP3Q96JB5 506 aa11.21□□□□□ -0.61
LRRC28-216ENST00000559819 NHEJ1Q9H9Q4 299 aaPredicted RBP11.21□□□□□ -0.61
LRRC28-216ENST00000559819 CCDC151A5D8V7 595 aa11.21□□□□□ -0.62
LRRC28-216ENST00000559819 POLRMTO00411 1230 aaKnown RBP11.21□□□□□ -0.62
LRRC28-216ENST00000559819 MPHOSPH10O00566 681 aaKnown RBP11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms