RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GNG11P61952 73 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 RBL2Q08999 1139 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 TMEM266Q2M3C6 531 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 COBLL1Q53SF7 1204 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 SMYD4Q8IYR2 804 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 UBXN4Q92575 508 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 IQCDQ96DY2 449 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 CEP95Q96GE4 821 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 GPR101Q96P66 508 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 MTRQ99707 1265 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 NAP1L4Q99733 375 aaKnown RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 LRRC27Q9C0I9 530 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 TMX4Q9H1E5 349 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 RIOX1Q9H6W3 641 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 LRRC4BQ9NT99 713 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 MYO1AQ9UBC5 1043 aa8.16□□□□□ -1.1
VPS13C-206ENST00000558338 DDX41Q9UJV9 622 aaKnown RBP8.16□□□□□ -1.1
VPS13C-206ENST00000558338 POLRMTO00411 1230 aaKnown RBP8.15□□□□□ -1.1
VPS13C-206ENST00000558338 CCNT1O60563 726 aaKnown RBP8.15□□□□□ -1.1
VPS13C-206ENST00000558338 HLA-DOAP06340 250 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 VEGFAP15692 232 aaPredicted RBP8.15□□□□□ -1.1
VPS13C-206ENST00000558338 MLLT3P42568 568 aaPredicted RBP8.15□□□□□ -1.1
VPS13C-206ENST00000558338 PRCPP42785 496 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 ADCY7P51828 1080 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 GOLGA8FQ08AF8 430 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 GOLGA8DPQ0D2H9 430 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 SLC35G1Q2M3R5 365 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 KMT5BQ4FZB7 885 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 FAM182BQ5T319 152 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 CYP26C1Q6V0L0 522 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 TOGARAM2Q6ZUX3 1019 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 RASGRP2Q7LDG7 609 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 GIMAP8Q8ND71 665 aaPredicted RBP8.15□□□□□ -1.1
VPS13C-206ENST00000558338 STAMQ92783 540 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 TRIM47Q96LD4 638 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 C7orf25Q9BPX7 421 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 GLT8D2Q9H1C3 349 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 TMEM60Q9H2L4 133 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 EXOC1Q9NV70 894 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 STK17AQ9UEE5 414 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 ATP6V0A2Q9Y487 856 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 DAGLAQ9Y4D2 1042 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 PARP3Q9Y6F1 533 aa8.15□□□□□ -1.1
VPS13C-206ENST00000558338 BAZ2BQ9UIF8 2168 aaKnown RBP8.15□□□□□ -1.1
VPS13C-206ENST00000558338 ANKRD31Q8N7Z5 1873 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 LGALS16A8MUM7 142 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 SLC26A4O43511 780 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 TADA3O75528 432 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 TTLL1O95922 423 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 GYPCP04921 128 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 SNHG28P0DPA3 235 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 PDHBP11177 359 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 H2AFXP16104 143 aaPredicted RBP8.15□□□□□ -1.11
VPS13C-206ENST00000558338 CCT6AP40227 531 aaKnown RBP8.15□□□□□ -1.11
VPS13C-206ENST00000558338 GABPAQ06546 454 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 TSR1Q2NL82 804 aaKnown RBP8.15□□□□□ -1.11
VPS13C-206ENST00000558338 LETM2Q2VYF4 491 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 NAALADL2Q58DX5 795 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 GPATCH4Q5T3I0 446 aaKnown RBP8.15□□□□□ -1.11
VPS13C-206ENST00000558338 CC2D2BQ6DHV5 1058 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 CNNM4Q6P4Q7 775 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 FBXO38Q6PIJ6 1188 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 SND1Q7KZF4 910 aaKnown RBP eCLIP8.15□□□□□ -1.11
VPS13C-206ENST00000558338 NUP88Q99567 741 aaPredicted RBP8.15□□□□□ -1.11
VPS13C-206ENST00000558338 NUP58Q9BVL2 599 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 ABHD10Q9NUJ1 306 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 MTMR4Q9NYA4 1195 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 POLLQ9UGP5 575 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 MRFAP1Q9Y605 127 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 ADGRG1Q9Y653 693 aa8.15□□□□□ -1.11
VPS13C-206ENST00000558338 GREB1LQ9C091 1923 aaPredicted RBP8.14□□□□□ -1.11
VPS13C-206ENST00000558338 IGKV6D-41A0A0C4DH26 115 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 SOWAHDA6NJG2 315 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 ADAMTS3O15072 1205 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 KLRC4O43908 158 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 FGFR1OPO95684 399 aaKnown RBP8.14□□□□□ -1.11
VPS13C-206ENST00000558338 GOLGA8HP0CJ92 632 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 NPR1P16066 1061 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 PLCG1P19174 1290 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 CCNE1P24864 410 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 ALDH1B1P30837 517 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 CASP14P31944 242 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 DNM2P50570 870 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 GTF2IP78347 998 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 MAP3K9P80192 1104 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 UBXN1Q04323 297 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 PPP2R3AQ06190 1150 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 DDR1Q08345 913 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 PTPN21Q16825 1174 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 ARHGAP29Q52LW3 1261 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 JAKMIP3Q5VZ66 844 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 USP17L2Q6R6M4 530 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 KRT222Q8N1A0 295 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 KIFC2Q96AC6 838 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 CDK5RAP3Q96JB5 506 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 PIGSQ96S52 555 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 ZC3H12CQ9C0D7 883 aaKnown RBP8.14□□□□□ -1.11
VPS13C-206ENST00000558338 TAB2Q9NYJ8 693 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 GDAQ9Y2T3 454 aa8.14□□□□□ -1.11
VPS13C-206ENST00000558338 ATP8B1O43520 1251 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms