RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 B4GALT4O60513 344 aa18.79■□□□□ 0.6
SCFD1-224ENST00000557713 FGBP02675 491 aa18.79■□□□□ 0.6
SCFD1-224ENST00000557713 PDHBP11177 359 aa18.79■□□□□ 0.6
SCFD1-224ENST00000557713 PSMC6P62333 389 aa18.79■□□□□ 0.6
SCFD1-224ENST00000557713 NMIQ13287 307 aaPredicted RBP18.79■□□□□ 0.6
SCFD1-224ENST00000557713 CLEC4DQ8WXI8 215 aa18.79■□□□□ 0.6
SCFD1-224ENST00000557713 TTC14Q96N46 770 aa18.79■□□□□ 0.6
SCFD1-224ENST00000557713 NOC4LQ9BVI4 516 aaKnown RBP18.79■□□□□ 0.6
SCFD1-224ENST00000557713 SPTBN5Q9NRC6 3674 aaKnown RBP18.78■□□□□ 0.6
SCFD1-224ENST00000557713 VCANP13611 3396 aa18.78■□□□□ 0.6
SCFD1-224ENST00000557713 SNHG28P0DPA3 235 aa18.78■□□□□ 0.6
SCFD1-224ENST00000557713 USP38Q8NB14 1042 aa18.78■□□□□ 0.6
SCFD1-224ENST00000557713 WDR11Q9BZH6 1224 aa18.78■□□□□ 0.6
SCFD1-224ENST00000557713 CXXC1Q9P0U4 656 aaPredicted RBP18.78■□□□□ 0.6
SCFD1-224ENST00000557713 PRUNE2Q8WUY3 3088 aa18.78■□□□□ 0.6
SCFD1-224ENST00000557713 PTPDC1A2A3K4 754 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 PCP11498 1178 aaKnown RBP18.77■□□□□ 0.6
SCFD1-224ENST00000557713 CCL23P55773 120 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 HAND2P61296 217 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 ZNF543Q08ER8 600 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 AKNAD1Q5T1N1 836 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 VWCEQ96DN2 955 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 WNT8AQ9H1J5 351 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 PNMA2Q9UL42 364 aa18.77■□□□□ 0.6
SCFD1-224ENST00000557713 CCDC171Q6TFL3 1326 aa18.76■□□□□ 0.59
SCFD1-224ENST00000557713 SLC30A10Q6XR72 485 aa18.76■□□□□ 0.59
SCFD1-224ENST00000557713 RNF207Q6ZRF8 634 aa18.76■□□□□ 0.59
SCFD1-224ENST00000557713 MFSD6Q6ZSS7 791 aa18.76■□□□□ 0.59
SCFD1-224ENST00000557713 ALDH8A1Q9H2A2 487 aaPredicted RBP18.76■□□□□ 0.59
SCFD1-224ENST00000557713 POLR3EQ9NVU0 708 aa18.76■□□□□ 0.59
SCFD1-224ENST00000557713 WDR19Q8NEZ3 1342 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 CALML3P27482 149 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 PURAQ00577 322 aaKnown RBP18.75■□□□□ 0.59
SCFD1-224ENST00000557713 RAB30Q15771 203 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 OTOP2Q7RTS6 562 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 TBC1D10CQ8IV04 446 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 LNPKQ9C0E8 428 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 MTIF3Q9H2K0 278 aaKnown RBP18.75■□□□□ 0.59
SCFD1-224ENST00000557713 MSRAQ9UJ68 235 aa18.75■□□□□ 0.59
SCFD1-224ENST00000557713 TRIM6-TRIM34B2RNG4 842 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 SDSP20132 328 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 EDNRBP24530 442 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 CPT1AP50416 773 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 RPS6P62753 249 aaKnown RBP18.74■□□□□ 0.59
SCFD1-224ENST00000557713 RPUSD2Q8IZ73 545 aaKnown RBP18.74■□□□□ 0.59
SCFD1-224ENST00000557713 RILPL2Q969X0 211 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 GAS2L1Q99501 681 aaPredicted RBP18.74■□□□□ 0.59
SCFD1-224ENST00000557713 PRDM12Q9H4Q4 367 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 CHD9Q3L8U1 2897 aa18.74■□□□□ 0.59
SCFD1-224ENST00000557713 MYL3P08590 195 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 SUPT20HL2P0C7V6 817 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 PDE4DQ08499 809 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 DGKHQ86XP1 1220 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 SMC5Q8IY18 1101 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 RGS22Q8NE09 1264 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 DNERQ8NFT8 737 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 OR6J1Q8NGC5 347 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 SYMPKQ92797 1274 aaKnown RBP18.73■□□□□ 0.59
SCFD1-224ENST00000557713 SCLYQ96I15 445 aa18.73■□□□□ 0.59
SCFD1-224ENST00000557713 MTG1Q9BT17 334 aaPredicted RBP18.73■□□□□ 0.59
SCFD1-224ENST00000557713 RNF41Q9H4P4 317 aaPredicted RBP18.73■□□□□ 0.59
SCFD1-224ENST00000557713 TRMT13Q9NUP7 481 aaKnown RBP18.73■□□□□ 0.59
SCFD1-224ENST00000557713 YBX2Q9Y2T7 364 aaKnown RBP18.73■□□□□ 0.59
SCFD1-224ENST00000557713 A6NJR5 290 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 NKRFO15226 690 aaKnown RBP eCLIP18.72■□□□□ 0.59
SCFD1-224ENST00000557713 MFAP1P55081 439 aaKnown RBP18.72■□□□□ 0.59
SCFD1-224ENST00000557713 AAMPQ13685 434 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 ADGRE1Q14246 886 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 GPATCH4Q5T3I0 446 aaKnown RBP18.72■□□□□ 0.59
SCFD1-224ENST00000557713 ESR2Q92731 530 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 MPHOSPH6Q99547 160 aaKnown RBP18.72■□□□□ 0.59
SCFD1-224ENST00000557713 ZKSCAN3Q9BRR0 538 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 NKX2-4Q9H2Z4 354 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 OSBPL3Q9H4L5 887 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 TNKSO95271 1327 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 NEDD4P46934 1319 aa18.72■□□□□ 0.59
SCFD1-224ENST00000557713 ZNF213O14771 459 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 GOLGA8HP0CJ92 632 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 CYP2C9P11712 490 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 NBPF20Q3BBV1 942 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 PLEKHM2Q8IWE5 1019 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 SCFD2Q8WU76 684 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 COPS5Q92905 334 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 UBA5Q9GZZ9 404 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 MAF1Q9H063 256 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 CPVLQ9H3G5 476 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 SLC28A3Q9HAS3 691 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 PRDM6Q9NQX0 595 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 GPHNQ9NQX3 736 aaPredicted RBP18.71■□□□□ 0.59
SCFD1-224ENST00000557713 SLC4A7Q9Y6M7 1214 aa18.71■□□□□ 0.59
SCFD1-224ENST00000557713 KPNA6O60684 536 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 NT5C2P49902 561 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 PPP2R5BQ15173 497 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 BRDTQ58F21 947 aaPredicted RBP18.7■□□□□ 0.58
SCFD1-224ENST00000557713 TJAP1Q5JTD0 557 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 B4GALNT3Q6L9W6 998 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 TBC1D5Q92609 795 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 ANKS1AQ92625 1134 aa18.7■□□□□ 0.58
SCFD1-224ENST00000557713 B4DLN1 442 aa18.69■□□□□ 0.58
SCFD1-224ENST00000557713 PFKMP08237 780 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms