RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ZNFX1Q9P2E3 1918 aaKnown RBP11.15□□□□□ -0.62
SYNE2-224ENST00000557024 PRR33A8MZF0 331 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 NEFLP07196 543 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 TMEM63BQ5T3F8 832 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 HERC6Q8IVU3 1022 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 CHST13Q8NET6 341 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 SLC9A7Q96T83 725 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 SEZ6LQ9BYH1 1024 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 SLC38A10Q9HBR0 1119 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 PDGFCQ9NRA1 345 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 GBF1Q92538 1859 aa11.14□□□□□ -0.63
SYNE2-224ENST00000557024 TNKSO95271 1327 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 SOWAHBA6NEL2 793 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 LPXNO60711 386 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 CHGBP05060 677 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 MS4A1P11836 297 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 ACTN1P12814 892 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 ZKSCAN2Q63HK3 967 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 CTR9Q6PD62 1173 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 EEPD1Q7L9B9 569 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 STK11IPQ8N1F8 1099 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 FAM133AQ8N9E0 248 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 PHOSPHO2Q8TCD6 241 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 TMC2Q8TDI7 906 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 GDPD5Q8WTR4 605 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 DDRGK1Q96HY6 314 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 SNX27Q96L92 541 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 BCL11AQ9H165 835 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 BOLA1Q9Y3E2 137 aa11.13□□□□□ -0.63
SYNE2-224ENST00000557024 LCHNA4D1U4 455 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 ASB14A6NK59 587 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 KIF28PB7ZC32 967 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 SUPT20HL2P0C7V6 817 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 RASA1P20936 1047 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 SSTR3P32745 418 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 ADD2P35612 726 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 RRP1P56182 461 aaKnown RBP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 NHLH1Q02575 133 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 ERC1Q8IUD2 1116 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 FBXO16Q8IX29 292 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 FTSJ3Q8IY81 847 aaKnown RBP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 GJD3Q8N144 294 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 PPP1R13LQ8WUF5 828 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 FTOQ9C0B1 505 aaKnown RBP eCLIP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 UBE2ZQ9H832 354 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 ACAD9Q9H845 621 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 A1CFQ9NQ94 594 aaKnown RBP11.12□□□□□ -0.63
SYNE2-224ENST00000557024 NYAP2Q9P242 653 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 CLIP2Q9UDT6 1046 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 COG6Q9Y2V7 657 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 SLC4A4Q9Y6R1 1079 aa11.12□□□□□ -0.63
SYNE2-224ENST00000557024 OAZ1P54368 228 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 CSPP1Q1MSJ5 1256 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 FAM47CQ5HY64 1035 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 IQSEC1Q6DN90 963 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 TAPT1Q6NXT6 567 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 TMCO2Q7Z6W1 182 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-224ENST00000557024 FAM178BQ8IXR5 827 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 RNF146Q9NTX7 359 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 PAG1Q9NWQ8 432 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 FEM1BQ9UK73 627 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 MTUS1Q9ULD2 1270 aa11.11□□□□□ -0.63
SYNE2-224ENST00000557024 ISY1Q9ULR0 285 aaKnown RBP11.11□□□□□ -0.63
SYNE2-224ENST00000557024 DPYSL4O14531 572 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 MYL3P08590 195 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 KCNA5P22460 613 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 RFC2P35250 354 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 CEP85Q6P2H3 762 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 KIAA1211Q6ZU35 1233 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 ITPRIPQ8IWB1 547 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 LRRC47Q8N1G4 583 aaKnown RBP11.1□□□□□ -0.63
SYNE2-224ENST00000557024 RETREG2Q8NC44 543 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 RHPN1Q8TCX5 695 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.1□□□□□ -0.63
SYNE2-224ENST00000557024 FBXL18Q96ME1 805 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.1□□□□□ -0.63
SYNE2-224ENST00000557024 MKNK2Q9HBH9 465 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 Q9Y3F1 56 aa11.1□□□□□ -0.63
SYNE2-224ENST00000557024 IFIT2P09913 472 aaKnown RBP11.09□□□□□ -0.63
SYNE2-224ENST00000557024 IQCF3P0C7M6 154 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 ALADP13716 330 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 IL9P15248 144 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 KCNJ6P48051 423 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 PURAQ00577 322 aaKnown RBP11.09□□□□□ -0.63
SYNE2-224ENST00000557024 NBPF20Q3BBV1 942 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 LEXMQ3ZCV2 418 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 CHMP4CQ96CF2 233 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 PURBQ96QR8 312 aaKnown RBP11.09□□□□□ -0.63
SYNE2-224ENST00000557024 ZBED2Q9BTP6 218 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 BOLA2Q9H3K6 86 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 POLR3EQ9NVU0 708 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 LMCD1Q9NZU5 365 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 ARPP21Q9UBL0 812 aaPredicted RBP11.09□□□□□ -0.63
SYNE2-224ENST00000557024 ZNF536O15090 1300 aa11.09□□□□□ -0.63
SYNE2-224ENST00000557024 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 IGKV6D-41A0A0C4DH26 115 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 C2orf72A6NCS6 295 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 TMEM232C9JQI7 657 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 BAIAP3O94812 1187 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 RLBP1P12271 317 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms