RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	NMT2	O60551	498 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADAMTS2	O95450	1211 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	OR52Z1	P0C646	297 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	SCP2	P22307	547 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	FOXO4	P98177	505 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	RAD9B	Q6WBX8	426 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC77	Q9BR77	488 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ATP8A1	Q9Y2Q0	1164 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ATP6V0A2	Q9Y487	856 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	EXOC5	O00471	708 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ACTN4	O43707	911 aa	Known RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	TFAP4	Q01664	338 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	SNX1	Q13596	522 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	TMC4	Q7Z404	712 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	SLF2	Q8IX21	1173 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	TCP11	Q8WWU5	503 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRC1	Q9BTT6	524 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	RAB17	Q9H0T7	212 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ANKZF1	Q9H8Y5	726 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	POLD4	Q9HCU8	107 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ASIC3	Q9UHC3	531 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	DDX25	Q9UHL0	483 aa	Known RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	PALLD	Q8WX93	1383 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005		A0A0U1RQJ8	604 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRIQ3	A6PVS8	624 aa	Predicted RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	PLCG1	P19174	1290 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	NR1I3	Q14994	352 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	DPH6	Q7L8W6	267 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	MYOCD	Q8IZQ8	938 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	MYCT1	Q8N699	235 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	OSBPL9	Q96SU4	736 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	ECT2	Q9H8V3	914 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	VEZT	Q9HBM0	779 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	HOMER2	Q9NSB8	354 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	FAM184B	Q9ULE4	1060 aa		5.48	□□□□□ -1.53
SYNE2-223	ENST00000557005	FAM205C	A6NFA0	338 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRC53	A6NM62	1247 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	ECM2	O94769	699 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	FDPS	P14324	419 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TCP1	P17987	556 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	EEF1G	P26641	437 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TCIRG1	Q13488	830 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	SH2D3C	Q8N5H7	860 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZNF473	Q8WTR7	871 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	IQCG	Q9H095	443 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	GPR108	Q9NPR9	543 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	SPDYE3	A6NKU9	549 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	UBE2Q2L	H0YL09	131 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	C6orf229	H3BNL8	230 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	STX2	P32856	288 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	CYP2J2	P51589	502 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TSNAXIP1	Q2TAA8	658 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	RBM43	Q6ZSC3	357 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC170	Q8IYT3	715 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	MICAL1	Q8TDZ2	1067 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	HVCN1	Q96D96	273 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	THOC1	Q96FV9	657 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	VPS37B	Q9H9H4	285 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	SALL3	Q9BXA9	1300 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	HLA-DOA	P06340	250 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	CHRND	Q07001	517 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	NEDD9	Q14511	834 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	RFX7	Q2KHR2	1363 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	HHAT	Q5VTY9	493 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC174	Q6PII3	467 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	PHLDB2	Q86SQ0	1253 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TAB3	Q8N5C8	712 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	STIM2	Q9P246	746 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	DIP2C	Q9Y2E4	1556 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	CPD	O75976	1380 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005		A0A1B0GTH6	734 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	PP2D1	A8MPX8	630 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	PRPF3	O43395	683 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	GNA14	O95837	355 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TRIP13	Q15645	432 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	HERC4	Q5GLZ8	1057 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TBC1D1	Q86TI0	1168 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	VSIG1	Q86XK7	387 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	RDH13	Q8NBN7	331 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	MAP3K14	Q99558	947 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	TRIM4	Q9C037	500 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	GGT7	Q9UJ14	662 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	CD2AP	Q9Y5K6	639 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	SMIM24	O75264	130 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	SERPING1	P05155	500 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	HIBADH	P31937	336 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	GRIN1	Q05586	938 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	DHX9	Q08211	1270 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	DPYD	Q12882	1025 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	UBE3C	Q15386	1083 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZKSCAN8	Q15776	578 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	DNAJC10	Q8IXB1	793 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRC47	Q8N1G4	583 aa	Known RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	ACTR5	Q9H9F9	607 aa	Predicted RBP	5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	KLC4	Q9NSK0	619 aa		5.47	□□□□□ -1.53
SYNE2-223	ENST00000557005	DIP2A	Q14689	1571 aa		5.46	□□□□□ -1.53

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