RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 LIPIQ6XZB0 460 aa6.48□□□□□ -1.37
SCFD1-219ENST00000556413 SAPCD2Q86UD0 394 aa6.48□□□□□ -1.37
SCFD1-219ENST00000556413 ZNF526Q8TF50 670 aaPredicted RBP6.48□□□□□ -1.37
SCFD1-219ENST00000556413 CRBNQ96SW2 442 aa6.48□□□□□ -1.37
SCFD1-219ENST00000556413 RXFP1Q9HBX9 757 aa6.48□□□□□ -1.37
SCFD1-219ENST00000556413 PCDHB10Q9UN67 800 aa6.48□□□□□ -1.37
SCFD1-219ENST00000556413 FAN1Q9Y2M0 1017 aa6.48□□□□□ -1.37
SCFD1-219ENST00000556413 STXBP3O00186 592 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 PPP1R11O60927 126 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-219ENST00000556413 DLX2Q07687 328 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-219ENST00000556413 PAK2Q13177 524 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 RTP5Q14D33 572 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 HEATR6Q6AI08 1181 aaKnown RBP6.47□□□□□ -1.37
SCFD1-219ENST00000556413 ALG3Q92685 438 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 TSPAN17Q96FV3 270 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 SPATA25Q9BR10 227 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 GBP3Q9H0R5 595 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 BCAS3Q9H6U6 928 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 PHAXQ9H814 394 aaKnown RBP6.47□□□□□ -1.37
SCFD1-219ENST00000556413 RWDD3Q9Y3V2 267 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 SLC12A7Q9Y666 1083 aa6.47□□□□□ -1.37
SCFD1-219ENST00000556413 A0A1W2PQH9 124 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 SH3D21A4FU49 640 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 EPHX1P07099 455 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 ADRB1P08588 477 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 PMLP29590 882 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 SOX9P48436 509 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 GIPRP48546 466 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 EIF6P56537 245 aaKnown RBP6.46□□□□□ -1.38
SCFD1-219ENST00000556413 PLP2Q04941 152 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 DPY19L1Q2PZI1 675 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 ZFYVE27Q5T4F4 411 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 ADAT2Q7Z6V5 191 aaKnown RBP6.46□□□□□ -1.38
SCFD1-219ENST00000556413 B3GNT8Q7Z7M8 397 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 LZTR1Q8N653 840 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 FGD4Q96M96 766 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 BDH2Q9BUT1 245 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 EFR3BQ9Y2G0 817 aa6.46□□□□□ -1.38
SCFD1-219ENST00000556413 PPM1BO75688 479 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 RECKO95980 971 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 SLC7A5Q01650 507 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 EFEMP1Q12805 493 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 NT5DC1Q5TFE4 455 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 GGNQ86UU5 652 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 CABP7Q86V35 215 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 CPNE8Q86YQ8 564 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 ZNF654Q8IZM8 581 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 C19orf47Q8N9M1 422 aaKnown RBP6.45□□□□□ -1.38
SCFD1-219ENST00000556413 KLHL6Q8WZ60 621 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 MTA3Q9BTC8 594 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 CGGBP1Q9UFW8 167 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-219ENST00000556413 BACE2Q9Y5Z0 518 aa6.45□□□□□ -1.38
SCFD1-219ENST00000556413 C2orf71A6NGG8 1288 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 SEPHS1P49903 392 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 TMCO4Q5TGY1 634 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 ARHGEF39Q8N4T4 335 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 NETO2Q8NC67 525 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 PEX11GQ96HA9 241 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 SPATA32Q96LK8 384 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 USP40Q9NVE5 1235 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 GULP1Q9UBP9 304 aa6.44□□□□□ -1.38
SCFD1-219ENST00000556413 SCAMP3O14828 347 aaKnown RBP6.43□□□□□ -1.38
SCFD1-219ENST00000556413 AMPD2Q01433 879 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 TRIM26Q12899 539 aaPredicted RBP6.43□□□□□ -1.38
SCFD1-219ENST00000556413 GRB10Q13322 594 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 METTL16Q86W50 562 aaKnown RBP6.43□□□□□ -1.38
SCFD1-219ENST00000556413 OR6P1Q8NGX9 317 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 SMARCC2Q8TAQ2 1214 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 RASGRP4Q8TDF6 673 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 CPA5Q8WXQ8 436 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 RCC1LQ96I51 464 aaKnown RBP6.43□□□□□ -1.38
SCFD1-219ENST00000556413 NOX5Q96PH1 765 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 NUDT5Q9UKK9 219 aa6.43□□□□□ -1.38
SCFD1-219ENST00000556413 NPHP3-ACAD11A0A0J9YXS1 232 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 SLC9A5Q14940 896 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 SPATS1Q496A3 300 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 UBXN11Q5T124 520 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 FERMT3Q86UX7 667 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 CARFQ8N187 725 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 GPRASP2Q96D09 838 aa6.42□□□□□ -1.38
SCFD1-219ENST00000556413 C7orf72A4D263 438 aa6.41□□□□□ -1.38
SCFD1-219ENST00000556413 NOBOXO60393 691 aa6.41□□□□□ -1.38
SCFD1-219ENST00000556413 ZBTB7AO95365 584 aa6.41□□□□□ -1.38
SCFD1-219ENST00000556413 PAMP19021 973 aa6.41□□□□□ -1.38
SCFD1-219ENST00000556413 CACNB2Q08289 660 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-219ENST00000556413 ZNF513Q8N8E2 541 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-219ENST00000556413 SPATA6Q9NWH7 488 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-219ENST00000556413 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.41□□□□□ -1.382e-7■■■■□ 23.5
SCFD1-219ENST00000556413 SUGT1Q9Y2Z0 365 aa6.41□□□□□ -1.38
SCFD1-219ENST00000556413 DUSP10Q9Y6W6 482 aa6.41□□□□□ -1.38
SCFD1-219ENST00000556413 TRBV23OR9-2A0A075B6M9 112 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 VAMP1P23763 118 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 PPP2R5EQ16537 467 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 WWC2Q6AWC2 1192 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 USP33Q8TEY7 942 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 DDX1Q92499 740 aaKnown RBP6.4□□□□□ -1.38
SCFD1-219ENST00000556413 SHDQ96IW2 340 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 SIT1Q9Y3P8 196 aa6.4□□□□□ -1.38
SCFD1-219ENST00000556413 NPHS1O60500 1241 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 FUCA1P04066 466 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms