RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 H0YGN5 161 aa23.94■■□□□ 1.42
CCDC88C-210ENST00000555995 CST5P28325 142 aaPredicted RBP23.94■■□□□ 1.42
CCDC88C-210ENST00000555995 HSPA4P34932 840 aa23.94■■□□□ 1.42
CCDC88C-210ENST00000555995 HOMER1Q86YM7 354 aa23.94■■□□□ 1.42
CCDC88C-210ENST00000555995 PCDHA1Q9Y5I3 950 aa23.94■■□□□ 1.42
CCDC88C-210ENST00000555995 PNMA6FA0A0J9YX94 578 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 MOXD2PA6NHM9 499 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 EIF5BO60841 1220 aaKnown RBP23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 ADAMTS4O75173 837 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 TNFAIP2Q03169 654 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 PDE4DQ08499 809 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 IQSEC1Q6DN90 963 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 C7orf61Q8IZ16 206 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 PCSK9Q8NBP7 692 aaKnown RBP23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 KCNB2Q92953 911 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 SEC63Q9UGP8 760 aaKnown RBP23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 PHF24Q9UPV7 400 aa23.93■■□□□ 1.42
CCDC88C-210ENST00000555995 PGK1P00558 417 aa23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 GJA9P57773 515 aa23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 GHRHRQ02643 423 aa23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 RRP36Q96EU6 259 aaKnown RBP23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 PIGSQ96S52 555 aa23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 UPF3AQ9H1J1 476 aaKnown RBP23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 Q9Y3F1 56 aa23.92■■□□□ 1.42
CCDC88C-210ENST00000555995 PSMA5P28066 241 aa23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 RCAN1P53805 252 aa23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 NOL8Q76FK4 1167 aaKnown RBP23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 FBXO16Q8IX29 292 aaPredicted RBP23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 RASEFQ8IZ41 740 aa23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 NSUN6Q8TEA1 469 aaKnown RBP23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 BAZ2BQ9UIF8 2168 aaKnown RBP23.91■■□□□ 1.42
CCDC88C-210ENST00000555995 CYTH3O43739 400 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 C6orf222P0C671 652 aaPredicted RBP23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 EDNRBP24530 442 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 NKX3-2P78367 333 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 FGD1P98174 961 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 EXOSC10Q01780 885 aaKnown RBP23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 LRRC26Q2I0M4 334 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 C1orf53Q5VUE5 145 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 SYTL5Q8TDW5 730 aaPredicted RBP23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 LENG1Q96BZ8 264 aaPredicted RBP23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 IWS1Q96ST2 819 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 MYL10Q9BUA6 226 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 LRRC2Q9BYS8 371 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 AP5M1Q9H0R1 490 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 GPHNQ9NQX3 736 aaPredicted RBP23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 RBM28Q9NW13 759 aaKnown RBP23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 CEP290O15078 2479 aa23.9■■□□□ 1.42
CCDC88C-210ENST00000555995 CFBP00751 764 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 ADCYAP1R1P41586 468 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 HSD17B4P51659 736 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 ADCK5Q3MIX3 580 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 APOA5Q6Q788 366 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 BLOC1S2Q6QNY1 142 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 TLK2Q86UE8 772 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 MICU3Q86XE3 530 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 KLHDC9Q8NEP7 349 aa23.89■■□□□ 1.41
CCDC88C-210ENST00000555995 NKRFO15226 690 aaKnown RBP eCLIP23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 ZEB2O60315 1214 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 SNX17Q15036 470 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 TAPT1Q6NXT6 567 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 SLC39A5Q6ZMH5 540 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 EEPD1Q7L9B9 569 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 FANCBQ8NB91 859 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 SCFD2Q8WU76 684 aa23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 JAKMIP1Q96N16 626 aaKnown RBP23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 PURBQ96QR8 312 aaKnown RBP23.88■■□□□ 1.41
CCDC88C-210ENST00000555995 A0A1W2PQ45 241 aaPredicted RBP23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 A0A1W2PQY0 241 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 RBM47A0AV96 593 aaKnown RBP23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 ZBTB43O43298 467 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 PPP1R11O60927 126 aaPredicted RBP23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 ACLYP53396 1101 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 ATN1P54259 1190 aaPredicted RBP23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 RTP1P59025 263 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 PPP2R5BQ15173 497 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 SLC35G1Q2M3R5 365 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 GLT1D1Q96MS3 346 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 RMDN3Q96TC7 470 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 PRKAG2Q9UGJ0 569 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 GNEQ9Y223 722 aaKnown RBP23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 SNX14Q9Y5W7 946 aa23.87■■□□□ 1.41
CCDC88C-210ENST00000555995 KIAA1217Q5T5P2 1943 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 GCOM1H8Y6P7 765 aaPredicted RBP23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 ADCY6O43306 1168 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 POLR2MP0CAP2 368 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 STXBP2Q15833 593 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 DUSP28Q4G0W2 176 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 GNASQ5JWF2 1037 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 ARHGEF16Q5VV41 709 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 TMTC3Q6ZXV5 915 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 STARD7Q9NQZ5 370 aa23.86■■□□□ 1.41
CCDC88C-210ENST00000555995 ELP1O95163 1332 aa23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 CABYRO75952 493 aa23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 SMPD1P17405 629 aa23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 KCNA10Q16322 511 aa23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 BRDTQ58F21 947 aaPredicted RBP23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 CCSAPQ6IQ19 270 aaPredicted RBP23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 FERMT2Q96AC1 680 aa23.85■■□□□ 1.41
CCDC88C-210ENST00000555995 WDR11Q9BZH6 1224 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms