RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ANKRD39Q53RE8 183 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 SMARCC2Q8TAQ2 1214 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 NT5C1AQ9BXI3 368 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 FBLN5Q9UBX5 448 aa6.62□□□□□ -1.35
SCFD1-216ENST00000555550 MATN3O15232 486 aa6.61□□□□□ -1.35
SCFD1-216ENST00000555550 FSHBP01225 129 aa6.61□□□□□ -1.35
SCFD1-216ENST00000555550 HS2ST1Q7LGA3 356 aa6.61□□□□□ -1.35
SCFD1-216ENST00000555550 ZNF761Q86XN6 746 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-216ENST00000555550 RGS22Q8NE09 1264 aa6.61□□□□□ -1.35
SCFD1-216ENST00000555550 ZBTB8AQ96BR9 441 aa6.61□□□□□ -1.35
SCFD1-216ENST00000555550 ZDHHC15Q96MV8 337 aa6.61□□□□□ -1.35
SCFD1-216ENST00000555550 NOL6Q9H6R4 1146 aaKnown RBP6.61□□□□□ -1.35
SCFD1-216ENST00000555550 PPP1R11O60927 126 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-216ENST00000555550 CORO7P57737 925 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 SMAD4Q13485 552 aaKnown RBP6.6□□□□□ -1.35
SCFD1-216ENST00000555550 PPP2R5DQ14738 602 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 ZYXQ15942 572 aaKnown RBP6.6□□□□□ -1.35
SCFD1-216ENST00000555550 DDX11Q96FC9 970 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 LOXL4Q96JB6 756 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 C8orf49Q96NF6 230 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 RWDD3Q9Y3V2 267 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 FHOD1Q9Y613 1164 aa6.6□□□□□ -1.35
SCFD1-216ENST00000555550 ZNF16P17020 682 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-216ENST00000555550 POU4F1Q01851 419 aa6.59□□□□□ -1.35
SCFD1-216ENST00000555550 TMEM87AQ8NBN3 555 aa6.59□□□□□ -1.35
SCFD1-216ENST00000555550 SLC16A11Q8NCK7 471 aa6.59□□□□□ -1.35
SCFD1-216ENST00000555550 SYT3Q9BQG1 590 aa6.59□□□□□ -1.35
SCFD1-216ENST00000555550 MCMBPQ9BTE3 642 aa6.59□□□□□ -1.35
SCFD1-216ENST00000555550 NTMQ9P121 344 aa6.59□□□□□ -1.35
SCFD1-216ENST00000555550 SF3B6Q9Y3B4 125 aaKnown RBP6.59□□□□□ -1.35
SCFD1-216ENST00000555550 MRPL58Q14197 206 aaKnown RBP6.58□□□□□ -1.36
SCFD1-216ENST00000555550 CPZQ66K79 652 aa6.58□□□□□ -1.36
SCFD1-216ENST00000555550 RUFY4Q6ZNE9 571 aa6.58□□□□□ -1.36
SCFD1-216ENST00000555550 TSPAN17Q96FV3 270 aa6.58□□□□□ -1.36
SCFD1-216ENST00000555550 KRTAP3-1Q9BYR8 98 aa6.58□□□□□ -1.36
SCFD1-216ENST00000555550 CACNB2Q08289 660 aaPredicted RBP6.57□□□□□ -1.36
SCFD1-216ENST00000555550 TBC1D10BQ4KMP7 808 aaPredicted RBP6.57□□□□□ -1.36
SCFD1-216ENST00000555550 UNC5AQ6ZN44 842 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 TTLL7Q6ZT98 887 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 CABP7Q86V35 215 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 LZTR1Q8N653 840 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 ADAMTS17Q8TE56 1095 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 SMARCC1Q92922 1105 aaPredicted RBP6.57□□□□□ -1.36
SCFD1-216ENST00000555550 SPON2Q9BUD6 331 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 ZNRF3Q9ULT6 936 aa6.57□□□□□ -1.36
SCFD1-216ENST00000555550 SUV39H1O43463 412 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 VAMP4O75379 141 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 ITGA4P13612 1032 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 ZNF20P17024 532 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 FBXW10Q5XX13 1052 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 CPNE8Q86YQ8 564 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 KIAA0825Q8IV33 1275 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 ADCY4Q8NFM4 1077 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 PEX11GQ96HA9 241 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 GULP1Q9UBP9 304 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 SIT1Q9Y3P8 196 aa6.56□□□□□ -1.36
SCFD1-216ENST00000555550 TRIM26Q12899 539 aaPredicted RBP6.55□□□□□ -1.36
SCFD1-216ENST00000555550 DPY19L1Q2PZI1 675 aa6.55□□□□□ -1.36
SCFD1-216ENST00000555550 STK32CQ86UX6 486 aa6.55□□□□□ -1.36
SCFD1-216ENST00000555550 CPA5Q8WXQ8 436 aa6.55□□□□□ -1.36
SCFD1-216ENST00000555550 SAMD11Q96NU1 681 aa6.55□□□□□ -1.36
SCFD1-216ENST00000555550 FERD3LQ96RJ6 166 aa6.55□□□□□ -1.36
SCFD1-216ENST00000555550 STXBP3O00186 592 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 SMARCA5O60264 1052 aaPredicted RBP6.54□□□□□ -1.36
SCFD1-216ENST00000555550 TCEAL1Q15170 157 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 RGL3Q3MIN7 710 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 TAB3Q8N5C8 712 aaPredicted RBP6.54□□□□□ -1.36
SCFD1-216ENST00000555550 USP33Q8TEY7 942 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 TM9SF2Q99805 663 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 GORASP1Q9BQQ3 440 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 MTA3Q9BTC8 594 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 SCAND2PQ9GZW5 306 aaPredicted RBP6.54□□□□□ -1.36
SCFD1-216ENST00000555550 NUDT5Q9UKK9 219 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 INVSQ9Y283 1065 aa6.54□□□□□ -1.36
SCFD1-216ENST00000555550 DIS3Q9Y2L1 958 aaKnown RBP6.54□□□□□ -1.36
SCFD1-216ENST00000555550 C1QTNF3-AMACRE9PGA6 284 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 AURKAO14965 403 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 CBFA2T2O43439 604 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 PLATP00750 562 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 SLC9A5Q14940 896 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 EEF1DP3Q658K8 133 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 RCSD1Q6JBY9 416 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 LIMS2Q7Z4I7 341 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 LINC00482Q8N8I6 264 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 CHST13Q8NET6 341 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 C1QTNF3Q9BXJ4 246 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 SRRDQ9UH36 339 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 ST6GALNAC2Q9UJ37 374 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 ZNF214Q9UL59 606 aaPredicted RBP6.53□□□□□ -1.36
SCFD1-216ENST00000555550 PPT2Q9UMR5 302 aa6.53□□□□□ -1.36
SCFD1-216ENST00000555550 ZNF536O15090 1300 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 LTBP3Q9NS15 1303 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 A0A087WZG4 1122 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 C8BP07358 591 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 IMPDH2P12268 514 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 GUCY2CP25092 1073 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 ZNF76P36508 570 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 MCTP2Q6DN12 878 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 SPRED1Q7Z699 444 aa6.52□□□□□ -1.37
SCFD1-216ENST00000555550 FAM26EQ8N5C1 309 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms