RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 TBC1D5Q92609 795 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 RRP36Q96EU6 259 aaKnown RBP16.47■□□□□ 0.23
SHMT2-217ENST00000555116 MAF1Q9H063 256 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 CRISPLD2Q9H0B8 497 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 PCDHA1Q9Y5I3 950 aa16.47■□□□□ 0.23
SHMT2-217ENST00000555116 PTPDC1A2A3K4 754 aa16.46■□□□□ 0.23
SHMT2-217ENST00000555116 PDRG1Q9NUG6 133 aa16.46■□□□□ 0.23
SHMT2-217ENST00000555116 NRBP1Q9UHY1 535 aa16.46■□□□□ 0.23
SHMT2-217ENST00000555116 NAP1L2Q9ULW6 460 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-217ENST00000555116 CNTNAP5Q8WYK1 1306 aa16.46■□□□□ 0.22
SHMT2-217ENST00000555116 BRCA2P51587 3418 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 CALML3P27482 149 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 METAP2P50579 478 aaKnown RBP eCLIP16.45■□□□□ 0.221e-6■■■□□ 16.1
SHMT2-217ENST00000555116 GHRHRQ02643 423 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 TRAF1Q13077 416 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 PPP2R5BQ15173 497 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 LHX8Q68G74 356 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 ARMCX2Q7L311 632 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 MCF2L2Q86YR7 1114 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 CCDC82Q8N4S0 544 aa16.45■□□□□ 0.22
SHMT2-217ENST00000555116 ALDH8A1Q9H2A2 487 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-217ENST00000555116 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-217ENST00000555116 ZNF865P0CJ78 1059 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 PDIA3P30101 505 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 SYTL5Q8TDW5 730 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 MORC4Q8TE76 937 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 KATNBL1Q9H079 304 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 DDX20Q9UHI6 824 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 DDX49Q9Y6V7 483 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 hCG_1642624A0A1W2PR95 340 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 ASB14A6NK59 587 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 SEPT4O43236 478 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 CNGA1P29973 690 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 ADD1P35611 737 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 ALDH5A1P51649 535 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 HSD17B4P51659 736 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 LARP6Q9BRS8 491 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 COL20A1Q9P218 1284 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 ADD3Q9UEY8 706 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 SEC63Q9UGP8 760 aaKnown RBP16.44■□□□□ 0.22
SHMT2-217ENST00000555116 OGDHLQ9ULD0 1010 aa16.44■□□□□ 0.22
SHMT2-217ENST00000555116 TFRCP02786 760 aaKnown RBP16.43■□□□□ 0.22
SHMT2-217ENST00000555116 CAPN2P17655 700 aa16.43■□□□□ 0.22
SHMT2-217ENST00000555116 CNPY2Q9Y2B0 182 aa16.43■□□□□ 0.22
SHMT2-217ENST00000555116 KIAA1217Q5T5P2 1943 aa16.43■□□□□ 0.22
SHMT2-217ENST00000555116 LOC102724159A0A0B4J2E5 919 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 CCDC196A0A1B0GTZ2 297 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 PWP2Q15269 919 aaKnown RBP16.42■□□□□ 0.22
SHMT2-217ENST00000555116 SAMD3Q8N6K7 520 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 DNERQ8NFT8 737 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 ZNF274Q96GC6 653 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-217ENST00000555116 TAAR1Q96RJ0 339 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 ABHD16BQ9H3Z7 469 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 MSCO60682 206 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 CFBP00751 764 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 ACVR2BQ13705 512 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 NTRK3Q16288 839 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 UBE2Q1Q7Z7E8 422 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 KIF2CQ99661 725 aa16.42■□□□□ 0.22
SHMT2-217ENST00000555116 MAP3K20Q9NYL2 800 aaKnown RBP16.42■□□□□ 0.22
SHMT2-217ENST00000555116 V9GY48 417 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-217ENST00000555116 EDNRBP24530 442 aa16.41■□□□□ 0.22
SHMT2-217ENST00000555116 MNX1P50219 401 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-217ENST00000555116 CCT2P78371 535 aaKnown RBP16.41■□□□□ 0.22
SHMT2-217ENST00000555116 C22orf23Q9BZE7 217 aa16.41■□□□□ 0.22
SHMT2-217ENST00000555116 NCOA5Q9HCD5 579 aaKnown RBP16.41■□□□□ 0.22
SHMT2-217ENST00000555116 ZHX1Q9UKY1 873 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-217ENST00000555116 PDE4DIPQ5VU43 2346 aa16.4■□□□□ 0.22
SHMT2-217ENST00000555116 RBM25P49756 843 aaKnown RBP16.4■□□□□ 0.22
SHMT2-217ENST00000555116 AK2P54819 239 aa16.4■□□□□ 0.22
SHMT2-217ENST00000555116 ANO1Q5XXA6 986 aa16.4■□□□□ 0.22
SHMT2-217ENST00000555116 GCOM1H8Y6P7 765 aaPredicted RBP16.39■□□□□ 0.22
SHMT2-217ENST00000555116 POLR2MP0CAP2 368 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 AKR1A1P14550 325 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 HOXA13P31271 388 aaPredicted RBP16.39■□□□□ 0.22
SHMT2-217ENST00000555116 NEK4P51957 841 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 WWC2Q6AWC2 1192 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 ANKLE1Q8NAG6 615 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 GPKOWQ92917 476 aaPredicted RBP eCLIP16.39■□□□□ 0.22
SHMT2-217ENST00000555116 RMDN3Q96TC7 470 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 TPCN1Q9ULQ1 816 aa16.39■□□□□ 0.22
SHMT2-217ENST00000555116 FARP2O94887 1054 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-217ENST00000555116 ANKRD1Q15327 319 aa16.39■□□□□ 0.21
SHMT2-217ENST00000555116 CCDC144BQ3MJ40 725 aa16.39■□□□□ 0.21
SHMT2-217ENST00000555116 TAPT1Q6NXT6 567 aa16.39■□□□□ 0.21
SHMT2-217ENST00000555116 HEATR3Q7Z4Q2 680 aa16.39■□□□□ 0.21
SHMT2-217ENST00000555116 NSUN6Q8TEA1 469 aaKnown RBP16.39■□□□□ 0.21
SHMT2-217ENST00000555116 FAM184BQ9ULE4 1060 aa16.39■□□□□ 0.21
SHMT2-217ENST00000555116 ADCY6O43306 1168 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 PRPF3O43395 683 aaKnown RBP16.38■□□□□ 0.21
SHMT2-217ENST00000555116 IFNAR1P17181 557 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 TYW1BQ6NUM6 668 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 EEPD1Q7L9B9 569 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 FBXO16Q8IX29 292 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-217ENST00000555116 LENG1Q96BZ8 264 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-217ENST00000555116 VTA1Q9NP79 307 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 PXMP2Q9NR77 195 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 ALPK3Q96L96 1907 aa16.38■□□□□ 0.21
SHMT2-217ENST00000555116 PIK3CDO00329 1044 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 MEIS2O14770 477 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms