RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CCDC144BQ3MJ40 725 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 RAB34Q9BZG1 259 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 BLZF1Q9H2G9 400 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 VCPKMTQ9H867 229 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 KBTBD4Q9NVX7 518 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 PRR12Q9ULL5 1215 aa29.7■■■□□ 2.35
CCDC88C-205ENST00000553403 PLA2G6O60733 806 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 ATP1A3P13637 1013 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 STAT2P52630 851 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 DDX25Q9UHL0 483 aaKnown RBP29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 RPN1P04843 607 aaKnown RBP29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 ASNSP08243 561 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 TXKP42681 527 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 GMPSP49915 693 aaPredicted RBP29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 RASSF7Q02833 373 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 ANO3Q9BYT9 981 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 GINM1Q9NU53 330 aa29.69■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L15C9J2P7 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L13C9JLJ4 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L11C9JVI0 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L18D6R9N7 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L22D6RA61 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L17D6RBQ6 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L19D6RCP7 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L20D6RJB6 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 ZNF18P17022 549 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L24Q0WX57 530 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 DHX8Q14562 1220 aaKnown RBP29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 KIAA1755Q5JYT7 1200 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 USP17L6PQ6QN14 398 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 MOXD1Q6UVY6 613 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 SPICE1Q8N0Z3 855 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 KIAA1524Q8TCG1 905 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 CHURC1Q8WUH1 139 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 NFE2L3Q9Y4A8 694 aa29.68■■■□□ 2.34
CCDC88C-205ENST00000553403 PPP1R3GB7ZBB8 358 aa29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 MEIS2O14770 477 aa29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 FOSP01100 380 aaPredicted RBP29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 PLCG1P19174 1290 aa29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 GSDMDP57764 484 aa29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 MICALL2Q8IY33 904 aa29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 CALML4Q96GE6 196 aa29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 MMTAG2Q9BU76 263 aaKnown RBP29.67■■■□□ 2.34
CCDC88C-205ENST00000553403 CYP3A7-CYP3A51PA0A087WV96 503 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 OFD1O75665 1012 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 SERPINC1P01008 464 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 CD44P16070 742 aaKnown RBP29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 CYP3A7P24462 503 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 UBASH3AP57075 661 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 KCNB1Q14721 858 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 FAM83BQ5T0W9 1011 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 ZNF658Q5TYW1 1059 aaPredicted RBP29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 SPATA1Q5VX52 437 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 FAM160B2Q86V87 743 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 TEPSINQ96N21 525 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 MBOAT7Q96N66 472 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 MED15Q96RN5 788 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 LRWD1Q9UFC0 647 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 PRELPP51888 382 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 SNAP25P60880 206 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 CNOT7Q9UIV1 285 aaKnown RBP29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 PYCARDQ9ULZ3 195 aa29.66■■■□□ 2.34
CCDC88C-205ENST00000553403 MYH7BA7E2Y1 1941 aa29.65■■■□□ 2.34
CCDC88C-205ENST00000553403 PHF20L1A8MW92 1017 aa29.65■■■□□ 2.34
CCDC88C-205ENST00000553403 PDZRN4Q6ZMN7 1036 aaPredicted RBP29.65■■■□□ 2.34
CCDC88C-205ENST00000553403 CACTINQ8WUQ7 758 aaKnown RBP29.65■■■□□ 2.34
CCDC88C-205ENST00000553403 SPTLC3Q9NUV7 552 aa29.65■■■□□ 2.34
CCDC88C-205ENST00000553403 LRRC8AQ8IWT6 810 aa29.64■■■□□ 2.34
CCDC88C-205ENST00000553403 TRMT44Q8IYL2 757 aaKnown RBP29.64■■■□□ 2.34
CCDC88C-205ENST00000553403 SYNRGQ9UMZ2 1314 aa29.64■■■□□ 2.33
CCDC88C-205ENST00000553403 EGFRP00533 1210 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 NOLC1Q14978 699 aaKnown RBP eCLIP29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 USH1GQ495M9 461 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 FILIP1Q7Z7B0 1213 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 LRRC15Q8TF66 581 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 CRYGNQ8WXF5 182 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 RANBP17Q9H2T7 1088 aaKnown RBP29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 STK17AQ9UEE5 414 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 FEM1BQ9UK73 627 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 GJA3Q9Y6H8 435 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 AMPD3Q01432 767 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 HAS1Q92839 578 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 PLIN2Q99541 437 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 C7orf25Q9BPX7 421 aa29.63■■■□□ 2.33
CCDC88C-205ENST00000553403 PIK3CDO00329 1044 aa29.62■■■□□ 2.33
CCDC88C-205ENST00000553403 TMC6Q7Z403 805 aa29.62■■■□□ 2.33
CCDC88C-205ENST00000553403 ZNF526Q8TF50 670 aaPredicted RBP29.62■■■□□ 2.33
CCDC88C-205ENST00000553403 GTPBP4Q9BZE4 634 aaKnown RBP29.62■■■□□ 2.33
CCDC88C-205ENST00000553403 GPBP1L1Q9HC44 474 aaPredicted RBP29.62■■■□□ 2.33
CCDC88C-205ENST00000553403 SLC26A4O43511 780 aa29.61■■■□□ 2.33
CCDC88C-205ENST00000553403 KLRC4O43908 158 aa29.61■■■□□ 2.33
CCDC88C-205ENST00000553403 LRMPQ12912 555 aa29.61■■■□□ 2.33
CCDC88C-205ENST00000553403 GRB10Q13322 594 aa29.61■■■□□ 2.33
CCDC88C-205ENST00000553403 SAMD7Q7Z3H4 446 aa29.61■■■□□ 2.33
CCDC88C-205ENST00000553403 RWDD2AQ9UIY3 292 aa29.61■■■□□ 2.33
CCDC88C-205ENST00000553403 RHOBTB3O94955 611 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 CDK11BP21127 795 aaKnown RBP29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 ARHGAP4P98171 946 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 KIF4BQ2VIQ3 1234 aa29.6■■■□□ 2.33
CCDC88C-205ENST00000553403 KRT79Q5XKE5 535 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms