RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CCDC47Q96A33 483 aaKnown RBP6.27□□□□□ -1.41
LIMA1-215ENST00000552823 CSRNP1Q96S65 589 aa6.27□□□□□ -1.41
LIMA1-215ENST00000552823 POTEB3A0JP26 581 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 POTECB2RU33 542 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 PSMA7O14818 248 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ZSCAN12O43309 604 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 SRGAP2O75044 1071 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ZMYND10O75800 440 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TTLL1O95922 423 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 BMP15O95972 392 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 NPR1P16066 1061 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 PABPC4Q13310 644 aaKnown RBP eCLIP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 NR1I3Q14994 352 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TCERG1LQ5VWI1 586 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 KRT79Q5XKE5 535 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ANKRD40Q6AI12 368 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 POTEBQ6S5H4 581 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 SV2BQ7L1I2 683 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 KRT25Q7Z3Z0 450 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 KIAA1328Q86T90 577 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 GSDMAQ96QA5 445 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 NOC4LQ9BVI4 516 aaKnown RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 COA1Q9GZY4 146 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 IKZF4Q9H2S9 585 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 AGPAT5Q9NUQ2 364 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ABCC6O95255 1503 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TTC26A0AVF1 554 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 MYMKA6NI61 221 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TRAF5O00463 557 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 FANCGO15287 622 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ARHGAP6O43182 974 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 PPP1R11O60927 126 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 FGRP09769 529 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 SHMT1P34896 483 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 JAG1P78504 1218 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 E2F4Q16254 413 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TMEM266Q2M3C6 531 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 HERC4Q5GLZ8 1057 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 NYAP1Q6ZVC0 841 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 REXO1L1PQ8IX06 675 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 DHX37Q8IY37 1157 aaKnown RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 SLC35F6Q8N357 371 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 C4orf32Q8N8J7 132 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 BPIFA3Q9BQP9 254 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ZMYND15Q9H091 742 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 FBXO28Q9NVF7 368 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 HDAC6Q9UBN7 1215 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 DDX25Q9UHL0 483 aaKnown RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 NHSL1Q5SYE7 1610 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ABCA3Q99758 1704 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 MYH7P12883 1935 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 F5H6K3 240 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ZBTB39O15060 712 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 MYO1BO43795 1136 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 GYPCP04921 128 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 IL1R1P14778 569 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF18P17022 549 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ALDH1B1P30837 517 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 LONP1P36776 959 aaKnown RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 KLRC3Q07444 240 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 CDC37Q16543 378 aaPredicted RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ECM1Q16610 540 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 CCDC40Q4G0X9 1142 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 KSR1Q8IVT5 923 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 RDH13Q8NBN7 331 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 PIGOQ8TEQ8 1089 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 MASTLQ96GX5 879 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 TRERF1Q96PN7 1200 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 FEZ1Q99689 392 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 DEF6Q9H4E7 631 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 ADD3Q9UEY8 706 aaKnown RBP6.26□□□□□ -1.41
LIMA1-215ENST00000552823 PCDHA12Q9UN75 941 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 GJA3Q9Y6H8 435 aa6.26□□□□□ -1.41
LIMA1-215ENST00000552823 POTEFA5A3E0 1075 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 PLEKP08567 350 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 CCDC175P0C221 793 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 POTEIP0CG38 1075 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 PCP11498 1178 aaKnown RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 ERCC5P28715 1186 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 PDE6BP35913 854 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 GYS2P54840 703 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 ABCB5Q2M3G0 1257 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 CRY2Q49AN0 593 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 TDRD12Q587J7 1177 aaKnown RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 TCP11X2Q5H9J9 407 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF658Q5TYW1 1059 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 POTEGQ6S5H5 508 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 POTEEQ6S8J3 1075 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 ZNF771Q7L3S4 317 aaPredicted RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 CNOT6LQ96LI5 555 aaKnown RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 TUBGCP2Q9BSJ2 902 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 RGL1Q9NZL6 768 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 LUC7L2Q9Y383 392 aaKnown RBP6.25□□□□□ -1.41
LIMA1-215ENST00000552823 DUSP10Q9Y6W6 482 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 SPATA31A6Q5VVP1 1343 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 CLIC2O15247 247 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 KIF5CO60282 957 aa6.25□□□□□ -1.41
LIMA1-215ENST00000552823 PHACTR2O75167 634 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms