RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NPR1P16066 1061 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 VAV2P52735 878 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 CCDC25Q86WR0 208 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 PAF1Q8N7H5 531 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 PI4KBQ9UBF8 816 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 ATF5Q9Y2D1 282 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 ZEB2O60315 1214 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 ATP2C2O75185 946 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 XRCC5P13010 732 aaKnown RBP16.6■□□□□ 0.25
CUX1-214ENST00000550008 ADGRA1Q86SQ6 560 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 NOX5Q96PH1 765 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 CLIC2O15247 247 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 CRKP46108 304 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 CDC37Q16543 378 aaPredicted RBP16.6■□□□□ 0.25
CUX1-214ENST00000550008 SYNCQ9H7C4 482 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 RSPH14Q9UHP6 348 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 CCPG1Q9ULG6 757 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 SCAF8Q9UPN6 1271 aaKnown RBP16.6■□□□□ 0.25
CUX1-214ENST00000550008 SLIT1O75093 1534 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 BMP3P12645 472 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 BAG6P46379 1132 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 SARM1Q6SZW1 724 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 MIER3Q7Z3K6 550 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 USP37Q86T82 979 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 HPS3Q969F9 1004 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 SPTLC3Q9NUV7 552 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 SAR1BQ9Y6B6 198 aa16.6■□□□□ 0.25
CUX1-214ENST00000550008 SFI1A8K8P3 1242 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 ZMYND10O75800 440 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 TTBK2Q6IQ55 1244 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 C8orf74Q6P047 294 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 FAM178BQ8IXR5 827 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 CCDC127Q96BQ5 260 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 FBXO2Q9UK22 296 aaPredicted RBP16.59■□□□□ 0.25
CUX1-214ENST00000550008 SPATA31A5Q5VU36 1347 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 SPATA31A7Q8IWB4 1347 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.59■□□□□ 0.25
CUX1-214ENST00000550008 CHRNA5P30532 468 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 AOC3Q16853 763 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 REREQ9P2R6 1566 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 SEC31AO94979 1220 aaKnown RBP16.59■□□□□ 0.25
CUX1-214ENST00000550008 PRCPP42785 496 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 FNBP1Q96RU3 617 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 SWAP70Q9UH65 585 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 TDP2O95551 362 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 CCDC50Q8IVM0 306 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 CCDC51Q96ER9 411 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 IMPG2Q9BZV3 1241 aa16.59■□□□□ 0.25
CUX1-214ENST00000550008 KDM3AQ9Y4C1 1321 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 ZBED4O75132 1171 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 NR2F2P24468 414 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 PLCB3Q01970 1234 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 LRCH2Q5VUJ6 765 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 HDXQ7Z353 690 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 POTEDQ86YR6 584 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 TBC1D16Q8TBP0 767 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 TSGA10Q9BZW7 698 aa16.58■□□□□ 0.25
CUX1-214ENST00000550008 FMR1Q06787 632 aaKnown RBP eCLIP16.58■□□□□ 0.24
CUX1-214ENST00000550008 U2AF1L4Q8WU68 220 aaKnown RBP16.58■□□□□ 0.24
CUX1-214ENST00000550008 LMBR1Q8WVP7 490 aa16.58■□□□□ 0.24
CUX1-214ENST00000550008 ATRIPQ8WXE1 791 aa16.58■□□□□ 0.24
CUX1-214ENST00000550008 TMOD4Q9NZQ9 345 aa16.58■□□□□ 0.24
CUX1-214ENST00000550008 RXRBP28702 533 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 SMTNP53814 917 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 TOGARAM2Q6ZUX3 1019 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 FBXO33Q7Z6M2 555 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 ADAT2Q7Z6V5 191 aaKnown RBP16.57■□□□□ 0.24
CUX1-214ENST00000550008 MASTLQ96GX5 879 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 PAGR1Q9BTK6 254 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 SPOPO43791 374 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 ODR4Q5SWX8 454 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 ZNF512BQ96KM6 892 aaPredicted RBP16.57■□□□□ 0.24
CUX1-214ENST00000550008 RABGAP1Q9Y3P9 1069 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 FER1L4A9Z1Z3 1794 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 AK8Q96MA6 479 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 TAOK3Q9H2K8 898 aa16.57■□□□□ 0.24
CUX1-214ENST00000550008 ORC4O43929 436 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 CXCR5P32302 372 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 RASSF7Q02833 373 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 LLGL1Q15334 1064 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 VPS72Q15906 364 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 ARMCX5Q6P1M9 558 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 CTTNBP2NLQ9P2B4 639 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 MYO1AQ9UBC5 1043 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 ATP6V0A2Q9Y487 856 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 PNMA6FA0A0J9YX94 578 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 CCNE1P24864 410 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 MRPS25P82663 173 aaKnown RBP16.56■□□□□ 0.24
CUX1-214ENST00000550008 FAM102BQ5T8I3 360 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 ARL6IP4Q66PJ3 421 aaKnown RBP16.56■□□□□ 0.24
CUX1-214ENST00000550008 SND1Q7KZF4 910 aaKnown RBP eCLIP16.56■□□□□ 0.24
CUX1-214ENST00000550008 PTF1AQ7RTS3 328 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 LAD1O00515 517 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 MTF1Q14872 753 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 XKR9Q5GH70 373 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 NLRX1Q86UT6 975 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 ANO3Q9BYT9 981 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 CALCOCO1Q9P1Z2 691 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 RWDD2AQ9UIY3 292 aa16.56■□□□□ 0.24
CUX1-214ENST00000550008 MRPL11Q9Y3B7 192 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms