RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 USP14P54578 494 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 FAAP100Q0VG06 881 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 PPIGQ13427 754 aaKnown RBP eCLIP8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 ANKRD1Q15327 319 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 UBE3CQ15386 1083 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 AAK1Q2M2I8 961 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 TMEM240Q5SV17 173 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 PPP2R2DQ66LE6 453 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 PSRC1Q6PGN9 363 aaPredicted RBP8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 CATSPERGQ6ZRH7 1159 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 NCAPG2Q86XI2 1143 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 ACER1Q8TDN7 264 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 MAP4K1Q92918 833 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 CHMP4CQ96CF2 233 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 IL17RAQ96F46 866 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 SNX27Q96L92 541 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 C12orf42Q96LP6 360 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 TM6SF1Q9BZW5 370 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 SLC28A3Q9HAS3 691 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 SLC5A4Q9NY91 659 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 YBX2Q9Y2T7 364 aaKnown RBP8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 CYP46A1Q9Y6A2 500 aa8.34□□□□□ -1.07
DEPDC4-208ENST00000549341 FRMPD3Q5JV73 1810 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 BAG3O95817 575 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 TIMP1P01033 207 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 HMGB1P09429 215 aaKnown RBP8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 TAL1P17542 331 aaPredicted RBP8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 GNAT2P19087 354 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 ADD2P35612 726 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 RABGGTBP53611 331 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 SLC9C2Q5TAH2 1124 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 CREB3L3Q68CJ9 461 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 NAA16Q6N069 864 aaPredicted RBP8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 ZNF365Q70YC5 407 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 MAML3Q96JK9 1138 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 UIMC1Q96RL1 719 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 SPATC1LQ9H0A9 340 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 GINM1Q9NU53 330 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 TBX21Q9UL17 535 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 MYH13Q9UKX3 1938 aa8.33□□□□□ -1.08
DEPDC4-208ENST00000549341 IGHA2P01877 340 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 CYP2E1P05181 493 aaPredicted RBP8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 PGK2P07205 417 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 ACLYP53396 1101 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 NECTIN1Q15223 517 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 IMMTQ16891 758 aaKnown RBP8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 MFSD5Q6N075 450 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 BLOC1S2Q6QNY1 142 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 LBX2Q6XYB7 198 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 C16orf59Q7L2K0 433 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 ANKRD33Q7Z3H0 272 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 ADGRA1Q86SQ6 560 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 TMEM199Q8N511 208 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 KCNB2Q92953 911 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 VTI1AQ96AJ9 217 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 KIF2CQ99661 725 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 NACAP1Q9BZK3 213 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 KIAA1683Q9H0B3 1180 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 MTIF3Q9H2K0 278 aaKnown RBP8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 CHMP5Q9NZZ3 219 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 SNX14Q9Y5W7 946 aa8.32□□□□□ -1.08
DEPDC4-208ENST00000549341 SYNRGQ9UMZ2 1314 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 TTC24A2A3L6 582 aaPredicted RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 MYADML2A6NDP7 307 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 ZBBXA8MT70 800 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 MPHOSPH10O00566 681 aaKnown RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 SLC27A2O14975 620 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 STRNO43815 780 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 OATP04181 439 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 FCER1AP12319 257 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 AKR1A1P14550 325 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 MYOGP15173 224 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 PDE6AP16499 860 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 CASTP20810 708 aaKnown RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 CYP2C18P33260 490 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 MRE11P49959 708 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 PTH1RQ03431 593 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 ABCB5Q2M3G0 1257 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 TSGA10IPQ3SY00 556 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 RASIP1Q5U651 963 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 VPS53Q5VIR6 699 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 OTOP2Q7RTS6 562 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 CERS3Q8IU89 383 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 FOXP4Q8IVH2 680 aaPredicted RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 NUP133Q8WUM0 1156 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 ZSCAN31Q96LW9 406 aaPredicted RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 JAKMIP1Q96N16 626 aaKnown RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 MMP19Q99542 508 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 ANTXR1Q9H6X2 564 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 CERS4Q9HA82 394 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 C11orf16Q9NQ32 467 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 PDRG1Q9NUG6 133 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 ZHX1Q9UKY1 873 aaPredicted RBP8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 CNPY2Q9Y2B0 182 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 REV3LO60673 3130 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 MYH2Q9UKX2 1941 aa8.31□□□□□ -1.08
DEPDC4-208ENST00000549341 FAM181BA6NEQ2 426 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 RFXAPO00287 272 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 GPAA1O43292 621 aa8.3□□□□□ -1.08
DEPDC4-208ENST00000549341 ADAMTS4O75173 837 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms