RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SRRDQ9UH36 339 aa6.15□□□□□ -1.42
VPS29-205ENST00000548539 GPR55Q9Y2T6 319 aaPredicted RBP6.15□□□□□ -1.42
VPS29-205ENST00000548539 DDAH1O94760 285 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 GJB6O95452 261 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 RAG1P15918 1043 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 CASP7P55210 303 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 RASA3Q14644 834 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 FXNQ16595 210 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 C6orf15Q6UXA7 325 aaPredicted RBP6.14□□□□□ -1.43
VPS29-205ENST00000548539 UNC5AQ6ZN44 842 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 TMC3Q7Z5M5 1100 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 JAZF1Q86VZ6 243 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 CNNM2Q9H8M5 875 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 SUSD2Q9UGT4 822 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 PCDHB10Q9UN67 800 aa6.14□□□□□ -1.43
VPS29-205ENST00000548539 TMA7Q9Y2S6 64 aaKnown RBP6.14□□□□□ -1.43
VPS29-205ENST00000548539 TLDC2A0PJX2 215 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 FSHBP01225 129 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 IGFBP6P24592 240 aaPredicted RBP6.13□□□□□ -1.43
VPS29-205ENST00000548539 TARBP2Q15633 366 aaKnown RBP6.13□□□□□ -1.43
VPS29-205ENST00000548539 CDCP2Q5VXM1 449 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 ZC3H14Q6PJT7 736 aaKnown RBP6.13□□□□□ -1.43
VPS29-205ENST00000548539 RPTNQ6XPR3 784 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 C19orf47Q8N9M1 422 aaKnown RBP6.13□□□□□ -1.43
VPS29-205ENST00000548539 NUP43Q8NFH3 380 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 MKL1Q969V6 931 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 FAM86C1Q9NVL1 165 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 TBX22Q9Y458 520 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 MRPL42Q9Y6G3 142 aaKnown RBP6.13□□□□□ -1.43
VPS29-205ENST00000548539 LTBP3Q9NS15 1303 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 IRS2Q9Y4H2 1338 aa6.13□□□□□ -1.43
VPS29-205ENST00000548539 A0A1W2PQ45 241 aaPredicted RBP6.12□□□□□ -1.43
VPS29-205ENST00000548539 A0A1W2PQY0 241 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 TNFRSF10CO14798 259 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 ADAM17P78536 824 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 NBPF9Q3BBW0 867 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 FAM178BQ8IXR5 827 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 ADGRG2Q8IZP9 1017 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 TAB3Q8N5C8 712 aaPredicted RBP6.12□□□□□ -1.43
VPS29-205ENST00000548539 SLC16A11Q8NCK7 471 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 SPATA25Q9BR10 227 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 TNFRSF12AQ9NP84 129 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 SMPD4Q9NXE4 827 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 ACSL6Q9UKU0 697 aa6.12□□□□□ -1.43
VPS29-205ENST00000548539 A0A1B0GTL3 188 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 OVOL3O00110 214 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 RGS13O14921 159 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 MATN3O15232 486 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 PDPK1O15530 556 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 ENDOUP21128 410 aaKnown RBP6.11□□□□□ -1.43
VPS29-205ENST00000548539 MAPKAPK2P49137 400 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 ZNF200P98182 395 aaPredicted RBP6.11□□□□□ -1.43
VPS29-205ENST00000548539 NR1I3Q14994 352 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 PLEKHN1Q494U1 663 aaPredicted RBP6.11□□□□□ -1.43
VPS29-205ENST00000548539 VWA3BQ502W6 1294 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 VHLLQ6RSH7 139 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 LIPIQ6XZB0 460 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 DNAJC7Q99615 494 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 MSRB2Q9Y3D2 182 aa6.11□□□□□ -1.43
VPS29-205ENST00000548539 CADPSQ9ULU8 1353 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 PRAMEF1O95521 474 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 MSL3P1P0C860 447 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 CNR2P34972 360 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 IFRD2Q12894 506 aaPredicted RBP6.1□□□□□ -1.43
VPS29-205ENST00000548539 TDRD10Q5VZ19 366 aaKnown RBP6.1□□□□□ -1.43
VPS29-205ENST00000548539 MRM1Q6IN84 353 aaKnown RBP6.1□□□□□ -1.43
VPS29-205ENST00000548539 SDE2Q6IQ49 451 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 SLCO6A1Q86UG4 719 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 FNIP1Q8TF40 1166 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 DDX1Q92499 740 aaKnown RBP6.1□□□□□ -1.43
VPS29-205ENST00000548539 SLC6A18Q96N87 628 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 CCDC113Q9H0I3 377 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS29-205ENST00000548539 PFDN2Q9UHV9 154 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 SLC12A7Q9Y666 1083 aa6.1□□□□□ -1.43
VPS29-205ENST00000548539 UBOX5O94941 541 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 ITGB3P05106 788 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 FOXO4P98177 505 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 SNW1Q13573 536 aaKnown RBP6.09□□□□□ -1.43
VPS29-205ENST00000548539 GNPTABQ3T906 1256 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 INTS3Q68E01 1043 aaKnown RBP6.09□□□□□ -1.43
VPS29-205ENST00000548539 KIAA1211LQ6NV74 962 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 TMEM192Q8IY95 271 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 ZNF512BQ96KM6 892 aaPredicted RBP6.09□□□□□ -1.43
VPS29-205ENST00000548539 SORCS2Q96PQ0 1159 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 CDADC1Q9BWV3 514 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 PHAXQ9H814 394 aaKnown RBP6.09□□□□□ -1.43
VPS29-205ENST00000548539 ERVK13-1Q9NX77 482 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 IMPACTQ9P2X3 320 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 PMF1-BGLAPU3KQ54 211 aa6.09□□□□□ -1.43
VPS29-205ENST00000548539 A0A1W2PQ27 194 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 A0A1W2PQ64 194 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 A0A1W2PQC6 194 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 A0A1W2PQD8 194 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 SIGLEC6O43699 453 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 PLA2G1BP04054 148 aaKnown RBP6.08□□□□□ -1.44
VPS29-205ENST00000548539 TP53P04637 393 aaPredicted RBP6.08□□□□□ -1.44
VPS29-205ENST00000548539 SLC7A5Q01650 507 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 KRTAP1-1Q07627 177 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 RASGRF1Q13972 1273 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms