RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SPATA31D1Q6ZQQ2 1576 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 SEC31AO94979 1220 aaKnown RBP9.79□□□□□ -0.84
VPS13D-212ENST00000543766 YY1P25490 414 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 HOXD12P35452 270 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 PPP1R2P41236 205 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 LMNB2Q03252 620 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 SLC44A4Q53GD3 710 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 PPP1R2P3Q6NXS1 205 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 IQUBQ8NA54 791 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 SLAIN1Q8ND83 568 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 ALPK1Q96QP1 1244 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 GTPBP6O43824 516 aaPredicted RBP9.79□□□□□ -0.84
VPS13D-212ENST00000543766 GMNNO75496 209 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 APOEP02649 317 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 TRIM27P14373 513 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 NLRP12P59046 1061 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 PI16Q6UXB8 463 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 PPM1NQ8N819 430 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 SMYD1Q8NB12 490 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 FAM161BQ96MY7 647 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 SYNDIG1Q9H7V2 258 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 EXOC7Q9UPT5 735 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 ERVK-7P63135 1459 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 ARHGEF28Q8N1W1 1705 aaKnown RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 KCNJ13O60928 360 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 ATF3P18847 181 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 KLHL30Q0D2K2 578 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 CUL4AQ13619 759 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 TJAP1Q5JTD0 557 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 HDAC7Q8WUI4 952 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 ZKSCAN4Q969J2 545 aaPredicted RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 MXD3Q9BW11 206 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 ATP13A3Q9H7F0 1226 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 PIK3R4Q99570 1358 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC169A6NNP5 214 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 GNAT3A8MTJ3 354 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 EVI5O60447 810 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 TMCC2O75069 709 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 CES1P23141 567 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 SEPHS1P49903 392 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 COPAP53621 1224 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 SLC22A8Q8TCC7 542 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 SRPK1Q96SB4 655 aaKnown RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 ATAD3AQ9NVI7 634 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 VPS18Q9P253 973 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 MTRF1LQ9UGC7 380 aaKnown RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 RIMKLBQ9ULI2 386 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 ATAD2Q6PL18 1390 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 CLTCQ00610 1675 aaKnown RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 TTLL13PA6NNM8 815 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 RTN2O75298 545 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 KRT13P13646 458 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 DNAJB2P25686 324 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 TCF7P36402 384 aaPredicted RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 USP11P51784 963 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 HSPA2P54652 639 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 CD83Q01151 205 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 ROR2Q01974 943 aaKnown RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 DCTN1Q14203 1278 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 TPD52L1Q16890 204 aaPredicted RBP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC122Q5T0U0 273 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 RTL10Q7L3V2 364 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 PIP4K2CQ8TBX8 421 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 TSNARE1Q96NA8 513 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS13D-212ENST00000543766 PREBQ9HCU5 417 aa9.78□□□□□ -0.84
VPS13D-212ENST00000543766 UBR1Q8IWV7 1749 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 TARSL2A2RTX5 802 aaKnown RBP9.77□□□□□ -0.84
VPS13D-212ENST00000543766 SGSM2O43147 1006 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 ZNF254O75437 659 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 EPB42P16452 691 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 DNAJB1P25685 340 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 ALDH3A1P30838 453 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 UBA7P41226 1012 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 PLA2G4AP47712 749 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 CABP7Q86V35 215 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 SMC1BQ8NDV3 1235 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 SLC7A3Q8WY07 619 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 CNKSR1Q969H4 720 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 UTP14AQ9BVJ6 771 aaKnown RBP9.77□□□□□ -0.84
VPS13D-212ENST00000543766 KCND1Q9NSA2 647 aa9.77□□□□□ -0.84
VPS13D-212ENST00000543766 ZFYVE9O95405 1425 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 RPL17P18621 184 aaKnown RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 PTGS2P35354 604 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 GGT6Q6P531 493 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 PPP1R21Q6ZMI0 780 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 TEX19Q8NA77 164 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 KAT2BQ92831 832 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 ALKBH8Q96BT7 664 aaKnown RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 TEX13BQ9BXU2 312 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 ZNF277Q9NRM2 450 aaPredicted RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 MYO1AQ9UBC5 1043 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 USP16Q9Y5T5 823 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 AHCYL1O43865 530 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 GADD45BO75293 160 aaPredicted RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 CDC45O75419 566 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 ATG7O95352 703 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 PRKACBP22694 351 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 ARMC4Q5T2S8 1044 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 OR8H2Q8N162 312 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms