RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 DENND2AQ9ULE3 1009 aa4.06□□□□□ -1.76
CHD4-209ENST00000542717 SMG5Q9UPR3 1016 aaKnown RBP4.06□□□□□ -1.76
CHD4-209ENST00000542717 WDR87Q6ZQQ6 2873 aa4.06□□□□□ -1.76
CHD4-209ENST00000542717 DMDP11532 3685 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 MROH7-TTC4A0A0A0MT08 1334 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 USP9XQ93008 2570 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 C2CD4DB7Z1M9 353 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 SPTLC1O15269 473 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 PER1O15534 1290 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 ARHGAP6O43182 974 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 PARNO95453 639 aaKnown RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 SEC24BO95487 1268 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 RB1P06400 928 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 LDHCP07864 332 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 SRGAP2BP0DMP2 458 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 SELPP16109 830 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 NPR3P17342 541 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 NCLP19338 710 aaKnown RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 COPB2P35606 906 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 STAT3P40763 770 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 RHBDL3P58872 404 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 HTRA4P83105 476 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 TBC1D8BQ0IIM8 1120 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 FOXC1Q12948 553 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 TMEM132BQ14DG7 1078 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 PUM3Q15397 648 aaKnown RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 LRRC24Q50LG9 513 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 SPTY2D1Q68D10 685 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 MAMDC4Q6UXC1 1216 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 LRRC8DQ7L1W4 858 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 ARMCX2Q7L311 632 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 ADGRD2Q7Z7M1 963 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 RIOX2Q8IUF8 465 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 C1orf210Q8IVY1 113 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 TMEFF1Q8IYR6 380 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 FIBCD1Q8N539 461 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 GLIS3Q8NEA6 775 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 CAGE1Q8TC20 777 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 SPATA18Q8TC71 538 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 SP7Q8TDD2 431 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 SUSD6Q92537 303 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 TLE6Q9H808 572 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 ERVK-5Q9HDB9 667 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 POLR3EQ9NVU0 708 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 RNF216Q9NWF9 866 aaPredicted RBP4.05□□□□□ -1.76
CHD4-209ENST00000542717 LIMD1Q9UGP4 676 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 RWDD3Q9Y3V2 267 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 COL4A3Q01955 1670 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 MYH13Q9UKX3 1938 aa4.05□□□□□ -1.76
CHD4-209ENST00000542717 CNOT1A5YKK6 2376 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 ASTN1O14525 1302 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 GPR75-ASB3A0A0A6YYF3 556 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 MPHOSPH10O00566 681 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 SEMA3EO15041 775 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 PER2O15055 1255 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 KRT38O76015 456 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 MAP4K4O95819 1239 aaPredicted RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 MMP1P03956 469 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 DCNP07585 359 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 SPINK2P20155 84 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 PTGS1P23219 599 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 PPP2R1AP30153 589 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 BMPR1AP36894 532 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 TMPOP42166 694 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 PLCD1P51178 756 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 LPAL2Q16609 132 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 PTGISQ16647 500 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 ABCB5Q2M3G0 1257 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 TCTN1Q2MV58 587 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 BRDTQ58F21 947 aaPredicted RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 ERICH6Q7L0X2 663 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 MAPKAPK5Q8IW41 473 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 ANKRD35Q8N283 1001 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 TDRD5Q8NAT2 981 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 LINS1Q8NG48 757 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 FAM163AQ96GL9 167 aaPredicted RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 BORCS6Q96GS4 357 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 MTG1Q9BT17 334 aaPredicted RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 IFIH1Q9BYX4 1025 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 ADAM33Q9BZ11 813 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 DNAJC18Q9H819 358 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 PARD6AQ9NPB6 346 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 C9orf78Q9NZ63 289 aaPredicted RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 SAP30BPQ9UHR5 308 aaKnown RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 PALD1Q9ULE6 856 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 ADAMTS8Q9UP79 889 aa4.04□□□□□ -1.76
CHD4-209ENST00000542717 CTDP1Q9Y5B0 961 aaPredicted RBP4.04□□□□□ -1.76
CHD4-209ENST00000542717 TRIP12Q14669 1992 aaPredicted RBP4.03□□□□□ -1.76
CHD4-209ENST00000542717 SPEGQ15772 3267 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 TANC1Q9C0D5 1861 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.03□□□□□ -1.76
CHD4-209ENST00000542717 C5orf67F2Z3F1 127 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 WDR46O15213 610 aaKnown RBP4.03□□□□□ -1.76
CHD4-209ENST00000542717 LAMTOR5O43504 91 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 RAD21O60216 631 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 NBNO60934 754 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 LGR5O75473 907 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 GLP2RO95838 553 aa4.03□□□□□ -1.76
CHD4-209ENST00000542717 TECP42680 631 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms