RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TRMT13Q9NUP7 481 aaKnown RBP21.13■□□□□ 0.97
CLSTN3-214ENST00000542663 STX8Q9UNK0 236 aa21.13■□□□□ 0.97
CLSTN3-214ENST00000542663 KIAA1217Q5T5P2 1943 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 SLC3A2P08195 630 aaKnown RBP21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 TTLL4Q14679 1199 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 DUSP28Q4G0W2 176 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 ZMYM1Q5SVZ6 1142 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 PI4K2BQ8TCG2 481 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 NECAB3Q96P71 396 aaPredicted RBP21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 RCAN3Q9UKA8 241 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 CCPG1Q9ULG6 757 aa21.12■□□□□ 0.97
CLSTN3-214ENST00000542663 ZBBXA8MT70 800 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 ICAM1P05362 532 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 CYP2C9P11712 490 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 BMP1P13497 986 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 ATP2A2P16615 1042 aaKnown RBP21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 TFF2Q03403 129 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 CTDSPL2Q05D32 466 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 MICALL1Q8N3F8 863 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 MYH6P13533 1939 aa21.11■□□□□ 0.97
CLSTN3-214ENST00000542663 TNKSO95271 1327 aa21.1■□□□□ 0.97
CLSTN3-214ENST00000542663 NOVP48745 357 aa21.1■□□□□ 0.97
CLSTN3-214ENST00000542663 ALDH5A1P51649 535 aaPredicted RBP21.1■□□□□ 0.97
CLSTN3-214ENST00000542663 PURAQ00577 322 aaKnown RBP21.1■□□□□ 0.97
CLSTN3-214ENST00000542663 RANBP17Q9H2T7 1088 aaKnown RBP21.1■□□□□ 0.97
CLSTN3-214ENST00000542663 TTC41PQ6P2S7 1318 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 TSPY2A6NKD2 308 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 RFXAPO00287 272 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 NFIBO00712 420 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 PFKMP08237 780 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 KCNQ1P51787 676 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 BAATQ14032 418 aaPredicted RBP21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 LRRFIP1Q32MZ4 808 aaKnown RBP21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 PPP4R3BQ5MIZ7 849 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 DEFB128Q7Z7B8 93 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 IL27Q8NEV9 243 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 OTUD7AQ8TE49 926 aaPredicted RBP21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 WDR11Q9BZH6 1224 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 POLR3EQ9NVU0 708 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 MTMR7Q9Y216 660 aa21.09■□□□□ 0.97
CLSTN3-214ENST00000542663 RBM47A0AV96 593 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 CA3P07451 260 aa21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 POU3F3P20264 500 aaPredicted RBP21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 SLC16A2P36021 539 aa21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 TTBK2Q6IQ55 1244 aa21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 BTNL9Q6UXG8 535 aa21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 FSD1Q9BTV5 496 aa21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 TSPYL2Q9H2G4 693 aaPredicted RBP21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 MTCH2Q9Y6C9 303 aa21.08■□□□□ 0.97
CLSTN3-214ENST00000542663 MYH7BA7E2Y1 1941 aa21.08■□□□□ 0.96
CLSTN3-214ENST00000542663 EPOPA6NHQ4 379 aa21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 MYL3P08590 195 aa21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 SUPT20HL2P0C7V6 817 aa21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 TMEM67Q5HYA8 995 aa21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 PPP1R13LQ8WUF5 828 aa21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 DCAF4Q8WV16 495 aa21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 ADD3Q9UEY8 706 aaKnown RBP21.07■□□□□ 0.96
CLSTN3-214ENST00000542663 LOC102724159A0A0B4J2E5 919 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 ARHGEF15O94989 841 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 CPT1AP50416 773 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 PWP2Q15269 919 aaKnown RBP21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 CCDC96Q2M329 555 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 NBPF20Q3BBV1 942 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 SLC30A10Q6XR72 485 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 MTG1Q9BT17 334 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 CERS4Q9HA82 394 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 ANAPC4Q9UJX5 808 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 SIP14410 1827 aa21.06■□□□□ 0.96
CLSTN3-214ENST00000542663 ERC2O15083 957 aa21.05■□□□□ 0.96
CLSTN3-214ENST00000542663 RANBP6O60518 1105 aaKnown RBP21.05■□□□□ 0.96
CLSTN3-214ENST00000542663 VPS53Q5VIR6 699 aa21.05■□□□□ 0.96
CLSTN3-214ENST00000542663 KRT40Q6A162 431 aa21.05■□□□□ 0.96
CLSTN3-214ENST00000542663 OR6J1Q8NGC5 347 aa21.05■□□□□ 0.96
CLSTN3-214ENST00000542663 CLEC4DQ8WXI8 215 aa21.05■□□□□ 0.96
CLSTN3-214ENST00000542663 PTPDC1A2A3K4 754 aa21.04■□□□□ 0.96
CLSTN3-214ENST00000542663 ORC4O43929 436 aa21.04■□□□□ 0.96
CLSTN3-214ENST00000542663 FGRP09769 529 aa21.04■□□□□ 0.96
CLSTN3-214ENST00000542663 PLA2G5P39877 138 aa21.04■□□□□ 0.96
CLSTN3-214ENST00000542663 SYDE2Q5VT97 1194 aa21.04■□□□□ 0.96
CLSTN3-214ENST00000542663 SLC9A7Q96T83 725 aa21.04■□□□□ 0.96
CLSTN3-214ENST00000542663 PITPNM1O00562 1244 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 IQCF3P0C7M6 154 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 RFC2P35250 354 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 TAP1Q03518 808 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 SKIV2LQ15477 1246 aaKnown RBP21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 AAK1Q2M2I8 961 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 FAM47CQ5HY64 1035 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 NFRKBQ6P4R8 1299 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 COPS5Q92905 334 aa21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 FRMPD2Q68DX3 1309 aaPredicted RBP21.03■□□□□ 0.96
CLSTN3-214ENST00000542663 LAMA4Q16363 1823 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 A6NJR5 290 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 ACTN1P12814 892 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 EDNRBP24530 442 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 CALML3P27482 149 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 SPRED2Q7Z698 418 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 TMEM47Q9BQJ4 181 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 GPCPD1Q9NPB8 672 aa21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 GPHNQ9NQX3 736 aaPredicted RBP21.02■□□□□ 0.96
CLSTN3-214ENST00000542663 SALL3Q9BXA9 1300 aa21.02■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms