RNA–Protein interactions for RNA: ENST00000542133.5

NPIPB4-215, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 910 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-215	ENST00000542133	SSH1	Q8WYL5	1049 aa		9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	UBA5	Q9GZZ9	404 aa		9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	VCPKMT	Q9H867	229 aa		9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PIH1D3	Q9NQM4	214 aa	Known RBP	9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	FBXO28	Q9NVF7	368 aa		9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	LMCD1	Q9NZU5	365 aa		9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ASTN1	O14525	1302 aa		9.26	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TRIO	O75962	3097 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MYH8	P13535	1937 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ANKRD62	A6NC57	917 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	VWA5A	O00534	786 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SRGAP3	O43295	1099 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CABYR	O75952	493 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CYP7A1	P22680	504 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ITGA7	Q13683	1181 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PTCRA	Q6ISU1	281 aa	Predicted RBP	9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CASC1	Q6TDU7	716 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TMEM179	Q6ZVK1	233 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CEP120	Q8N960	986 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PHOSPHO2	Q8TCD6	241 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TMC2	Q8TDI7	906 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ANP32B	Q92688	251 aa	Known RBP	9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	FGD4	Q96M96	766 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	KATNBL1	Q9H079	304 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ABHD16B	Q9H3Z7	469 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TMX2	Q9Y320	296 aa		9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	9.25	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SI	P14410	1827 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	C5orf42	Q9H799	3197 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	LCHN	A4D1U4	455 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	GRXCR2	A6NFK2	248 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ACTN1	P12814	892 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PTPN5	P54829	565 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ICA1	Q05084	483 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MTX1	Q13505	466 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TTC39A	Q5SRH9	613 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	RINL	Q6ZS11	566 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	DEFB128	Q7Z7B8	93 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SIAH1	Q8IUQ4	282 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MAGEB6	Q8N7X4	407 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	DDX11	Q96FC9	970 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MFSD14A	Q96MC6	490 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MEIS3	Q99687	375 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TEX13B	Q9BXU2	312 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SEZ6L	Q9BYH1	1024 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SH2D4A	Q9H788	454 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ARHGEF10L	Q9HCE6	1279 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PPP1R9A	Q9ULJ8	1098 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MYO15A	Q9UKN7	3530 aa		9.24	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CACNA1H	O95180	2353 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TECTA	O75443	2155 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	KIF28P	B7ZC32	967 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ZAP70	P43403	619 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PSMC6	P62333	389 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ZP2	Q05996	745 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	MYBPC2	Q14324	1141 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SNRNP48	Q6IEG0	339 aa	Known RBP	9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ARMCX2	Q7L311	632 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TLK2	Q86UE8	772 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TRIM44	Q96DX7	344 aa	Predicted RBP	9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	HDAC5	Q9UQL6	1122 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	KMT2E	Q8IZD2	1858 aa		9.23	□□□□□ -0.93
NPIPB4-215	ENST00000542133	GFRA3	O60609	400 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	IDH1	O75874	414 aa	Known RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	POLR3D	P05423	398 aa	Predicted RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CYP2C9	P11712	490 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	AKR1B1	P15121	316 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PTGS1	P23219	599 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	RFC2	P35250	354 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	FSCN1	Q16658	493 aa	Known RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	PUS10	Q3MIT2	529 aa	Known RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	FOXD4L3	Q6VB84	417 aa	Predicted RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	CCDC144CP	Q8IYA2	1237 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	NEK9	Q8TD19	979 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	ZNF512B	Q96KM6	892 aa	Predicted RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	DBNDD2	Q9BQY9	259 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	RIOK1	Q9BRS2	568 aa	Known RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	SUGCT	Q9HAC7	445 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	TRMT13	Q9NUP7	481 aa	Known RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	GNE	Q9Y223	722 aa	Known RBP	9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133	RIPK3	Q9Y572	518 aa		9.22	□□□□□ -0.93
NPIPB4-215	ENST00000542133		H3BQ06	376 aa	Predicted RBP	9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	PPP1R37	O75864	691 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	BAIAP3	O94812	1187 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	TNFAIP2	Q03169	654 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	TCF15	Q12870	199 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	NBPF20	Q3BBV1	942 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	CCDC158	Q5M9N0	1113 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	FAM83B	Q5T0W9	1011 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	ZNF687	Q8N1G0	1237 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	TET1	Q8NFU7	2136 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	DRC1	Q96MC2	740 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	9.21	□□□□□ -0.94	6e-6	■■■■■ 48.1
NPIPB4-215	ENST00000542133	PRKAG3	Q9UGI9	489 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	MTUS1	Q9ULD2	1270 aa		9.21	□□□□□ -0.94
NPIPB4-215	ENST00000542133	TNKS	O95271	1327 aa		9.21	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms