RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 NRBP1Q9UHY1 535 aa11.31□□□□□ -0.6
YBX3-212ENST00000542002 CNPY2Q9Y2B0 182 aa11.31□□□□□ -0.6
YBX3-212ENST00000542002 PCDHA1Q9Y5I3 950 aa11.31□□□□□ -0.6
YBX3-212ENST00000542002 ABCB11O95342 1321 aa11.31□□□□□ -0.6
YBX3-212ENST00000542002 ZNFX1Q9P2E3 1918 aaKnown RBP11.31□□□□□ -0.6
YBX3-212ENST00000542002 PGK1P00558 417 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 HMGB1P09429 215 aaKnown RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 CASTP20810 708 aaKnown RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 SMARCA1P28370 1054 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 CDC27P30260 824 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 ALDH5A1P51649 535 aaPredicted RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 APOBRQ0VD83 1088 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 CCDC144BQ3MJ40 725 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 EEPD1Q7L9B9 569 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 MICU3Q86XE3 530 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 FBXL16Q8N461 479 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 CTCFLQ8NI51 663 aaPredicted RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 LARP6Q9BRS8 491 aaKnown RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 SPZ1Q9BXG8 430 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 PCDH10Q9P2E7 1040 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 ZHX1Q9UKY1 873 aaPredicted RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 PNMA2Q9UL42 364 aa11.3□□□□□ -0.6
YBX3-212ENST00000542002 MRPL11Q9Y3B7 192 aaKnown RBP11.3□□□□□ -0.6
YBX3-212ENST00000542002 KLF18A0A0U1RQI7 1052 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 MYADML2A6NDP7 307 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 ASB14A6NK59 587 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 MSCO60682 206 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 CALM1P0DP23 149 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 CALM2P0DP24 149 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 CALM3P0DP25 149 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 CAPN2P17655 700 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 EDNRBP24530 442 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 KIF5BP33176 963 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 ADD1P35611 737 aaKnown RBP11.29□□□□□ -0.6
YBX3-212ENST00000542002 TOB2Q14106 344 aaPredicted RBP11.29□□□□□ -0.6
YBX3-212ENST00000542002 LRRC41Q15345 812 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 BLOC1S2Q6QNY1 142 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 TMTC3Q6ZXV5 915 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 RUFY3Q7L099 469 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 NECAB2Q7Z6G3 386 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 FBXO16Q8IX29 292 aaPredicted RBP11.29□□□□□ -0.6
YBX3-212ENST00000542002 BRF1Q92994 677 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 LZTS2Q9BRK4 669 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 AGXT2Q9BYV1 514 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 ABHD16BQ9H3Z7 469 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 C11orf49Q9H6J7 331 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 FAM184BQ9ULE4 1060 aa11.29□□□□□ -0.6
YBX3-212ENST00000542002 CTAGE5O15320 804 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 ZBTB43O43298 467 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 ADAMTS4O75173 837 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 CFBP00751 764 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 RARBP10826 455 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 AKR1A1P14550 325 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 SMPD1P17405 629 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 HOXA13P31271 388 aaPredicted RBP11.28□□□□□ -0.6
YBX3-212ENST00000542002 ADCYAP1R1P41586 468 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 HSD17B4P51659 736 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 GHRHRQ02643 423 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 CCSAPQ6IQ19 270 aaPredicted RBP11.28□□□□□ -0.6
YBX3-212ENST00000542002 DPF3Q92784 378 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 UPF3BQ9BZI7 483 aaKnown RBP11.28□□□□□ -0.6
YBX3-212ENST00000542002 SENP6Q9GZR1 1112 aaPredicted RBP11.28□□□□□ -0.6
YBX3-212ENST00000542002 XPNPEP3Q9NQH7 507 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 DNAH12Q6ZR08 3092 aa11.28□□□□□ -0.6
YBX3-212ENST00000542002 DNM1LO00429 736 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 DUSP11O75319 330 aaKnown RBP11.27□□□□□ -0.61
YBX3-212ENST00000542002 PSMA5P28066 241 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 PDIA3P30101 505 aaKnown RBP11.27□□□□□ -0.61
YBX3-212ENST00000542002 GNAQP50148 359 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 EVCP57679 992 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 LRRC26Q2I0M4 334 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 C8orf34Q49A92 452 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 SYNE3Q6ZMZ3 975 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 MCF2L2Q86YR7 1114 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 ARRDC4Q8NCT1 418 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 KLHDC9Q8NEP7 349 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 DNERQ8NFT8 737 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 FERMT2Q96AC1 680 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
YBX3-212ENST00000542002 TM6SF1Q9BZW5 370 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 MAF1Q9H063 256 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 ADD3Q9UEY8 706 aaKnown RBP11.27□□□□□ -0.61
YBX3-212ENST00000542002 GNEQ9Y223 722 aaKnown RBP11.27□□□□□ -0.61
YBX3-212ENST00000542002 V9GY48 417 aaPredicted RBP11.27□□□□□ -0.61
YBX3-212ENST00000542002 SYNRGQ9UMZ2 1314 aa11.27□□□□□ -0.61
YBX3-212ENST00000542002 RBM47A0AV96 593 aaKnown RBP11.26□□□□□ -0.61
YBX3-212ENST00000542002 H0YGN5 161 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 MEIS2O14770 477 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 PPFIA3O75145 1194 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 TNFAIP2Q03169 654 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 KCNA10Q16322 511 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 RTN1Q16799 776 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 IQSEC1Q6DN90 963 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 TYW1BQ6NUM6 668 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 IL17RAQ96F46 866 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 ZFP91Q96JP5 570 aaPredicted RBP11.26□□□□□ -0.61
YBX3-212ENST00000542002 RMDN3Q96TC7 470 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 PXMP2Q9NR77 195 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 CYP46A1Q9Y6A2 500 aa11.26□□□□□ -0.61
YBX3-212ENST00000542002 PLXNA1Q9UIW2 1896 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms