RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RRP12Q5JTH9 1297 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 SYDE2Q5VT97 1194 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 BTNL9Q6UXG8 535 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 KIAA1211Q6ZU35 1233 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 DCAF4Q8WV16 495 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 CLEC4DQ8WXI8 215 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 AP5M1Q9H0R1 490 aa18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 TRMT13Q9NUP7 481 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-213ENST00000541953 ANKRD45Q5TZF3 282 aa18.27■□□□□ 0.52
CLSTN3-213ENST00000541953 CRBNQ96SW2 442 aa18.27■□□□□ 0.52
CLSTN3-213ENST00000541953 CPVLQ9H3G5 476 aa18.27■□□□□ 0.52
CLSTN3-213ENST00000541953 VTA1Q9NP79 307 aa18.27■□□□□ 0.52
CLSTN3-213ENST00000541953 SCN10AQ9Y5Y9 1956 aa18.27■□□□□ 0.52
CLSTN3-213ENST00000541953 TANC1Q9C0D5 1861 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 PDHBP11177 359 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 CYP2C9P11712 490 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 PDE1AP54750 535 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 RRP1P56182 461 aaKnown RBP18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 ALX1Q15699 326 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 DUSP28Q4G0W2 176 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 IQSEC1Q6DN90 963 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 TBC1D10CQ8IV04 446 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 COPS5Q92905 334 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 ALDH8A1Q9H2A2 487 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 TOMM22Q9NS69 142 aa18.26■□□□□ 0.51
CLSTN3-213ENST00000541953 PTPRSQ13332 1948 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 PTPDC1A2A3K4 754 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 CABYRO75952 493 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 FGBP02675 491 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 CALML3P27482 149 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 NMIQ13287 307 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 CCDC85BQ15834 202 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 EVI5LQ96CN4 794 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 WDR11Q9BZH6 1224 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 HELLSQ9NRZ9 838 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 LAMA4Q16363 1823 aa18.25■□□□□ 0.51
CLSTN3-213ENST00000541953 NEDD4P46934 1319 aa18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 RBM47A0AV96 593 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 HSPD1P10809 573 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 TOP1P11387 765 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 PURAQ00577 322 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 TTLL4Q14679 1199 aa18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 TJAP1Q5JTD0 557 aa18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 GAS2L1Q99501 681 aaPredicted RBP18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 Q9Y3F1 56 aa18.24■□□□□ 0.51
CLSTN3-213ENST00000541953 ARHGEF15O94989 841 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 ARIH2O95376 493 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 MYL3P08590 195 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 ZNF543Q08ER8 600 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 PPP4R3BQ5MIZ7 849 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 ZKSCAN3Q9BRR0 538 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 TET1Q8NFU7 2136 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 TNKSO95271 1327 aa18.23■□□□□ 0.51
CLSTN3-213ENST00000541953 GOLGA8HP0CJ92 632 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 SNHG28P0DPA3 235 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 EDNRBP24530 442 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 RPS6P62753 249 aaKnown RBP18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 RAB30Q15771 203 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 MCMDC2Q4G0Z9 681 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 AKNAD1Q5T1N1 836 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 OR6J1Q8NGC5 347 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 TBC1D5Q92609 795 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 TCP11L1Q9NUJ3 509 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 MSRAQ9UJ68 235 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 BDP1A6H8Y1 2624 aa18.22■□□□□ 0.51
CLSTN3-213ENST00000541953 ZEB2O60315 1214 aa18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 IGFBP4P22692 258 aa18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 RNF207Q6ZRF8 634 aa18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 DEFB128Q7Z7B8 93 aa18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 ADD3Q9UEY8 706 aaKnown RBP18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 ZMYM6O95789 1325 aa18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 CCDC171Q6TFL3 1326 aa18.21■□□□□ 0.51
CLSTN3-213ENST00000541953 EPOPA6NHQ4 379 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 ZBBXA8MT70 800 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 RFXAPO00287 272 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 NBPF20Q3BBV1 942 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 USH1GQ495M9 461 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 SPRED2Q7Z698 418 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 LNPKQ9C0E8 428 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 SLC28A3Q9HAS3 691 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 COL20A1Q9P218 1284 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 SLC4A7Q9Y6M7 1214 aa18.2■□□□□ 0.5
CLSTN3-213ENST00000541953 PPP2R2DQ66LE6 453 aa18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 SYMPKQ92797 1274 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 CTAGE1Q96RT6 745 aa18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 MTG1Q9BT17 334 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 UBA5Q9GZZ9 404 aa18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 POLR3EQ9NVU0 708 aa18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 THEGQ9P2T0 379 aa18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 RAPGEFL1Q9UHV5 662 aa18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 TCF20Q9UGU0 1960 aaKnown RBP18.19■□□□□ 0.5
CLSTN3-213ENST00000541953 COL4A4P53420 1690 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 TNFRSF10AO00220 468 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 CPT1AP50416 773 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 PDE4DQ08499 809 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 HDAC1Q13547 482 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 PPP2R5BQ15173 497 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 FAM47CQ5HY64 1035 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 KRT40Q6A162 431 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 MICALL1Q8N3F8 863 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms