RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 PNMA1Q8ND90 353 aa13.86□□□□□ -0.19
CLSTN3-211ENST00000541667 SPC25Q9HBM1 224 aa13.86□□□□□ -0.19
CLSTN3-211ENST00000541667 TAF6LQ9Y6J9 622 aa13.86□□□□□ -0.19
CLSTN3-211ENST00000541667 CDH23Q9H251 3354 aa13.86□□□□□ -0.19
CLSTN3-211ENST00000541667 LAMA4Q16363 1823 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 A0A0U1RQG5 324 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 CHMLP26374 656 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 IRX6P78412 446 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 PTH1RQ03431 593 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 DUSP28Q4G0W2 176 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 MFSD5Q6N075 450 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 RNF207Q6ZRF8 634 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 KIAA1211Q6ZU35 1233 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 CYB5R4Q7L1T6 521 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 ADGRF4Q8IZF3 695 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 VWCEQ96DN2 955 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 TTYH1Q9H313 450 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 SEMA6BQ9H3T3 888 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 ADD3Q9UEY8 706 aaKnown RBP13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 CTNNA3Q9UI47 895 aa13.85□□□□□ -0.19
CLSTN3-211ENST00000541667 PTPDC1A2A3K4 754 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 CALML3P27482 149 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 SMAD3P84022 425 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 IMMTQ16891 758 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 SLC35G1Q2M3R5 365 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 CCDC178Q5BJE1 867 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 RASIP1Q5U651 963 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 NOL8Q76FK4 1167 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 IQCA1Q86XH1 822 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 STAG2Q8N3U4 1231 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 VTI1AQ96AJ9 217 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 WDR11Q9BZH6 1224 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 AP5M1Q9H0R1 490 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 JMJD4Q9H9V9 463 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 COL20A1Q9P218 1284 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 PNMA2Q9UL42 364 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 TNKSO95271 1327 aa13.84□□□□□ -0.19
CLSTN3-211ENST00000541667 CABYRO75952 493 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 CYP21A2P08686 494 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 PSMC6P62333 389 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 FPGSQ05932 587 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 ITGA7Q13683 1181 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 CDC37Q16543 378 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 TMEM240Q5SV17 173 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 DNERQ8NFT8 737 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 MTMR8Q96EF0 704 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 FAM161BQ96MY7 647 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.83□□□□□ -0.26e-7■■■□□ 15.3
CLSTN3-211ENST00000541667 KRT23Q9C075 422 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 TRPV6Q9H1D0 765 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 KAT14Q9H8E8 782 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 SENP2Q9HC62 589 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 MROH7Q68CQ1 1323 aa13.83□□□□□ -0.2
CLSTN3-211ENST00000541667 PALM3A6NDB9 673 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 OPLAHO14841 1288 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 CSF2RAP15509 400 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 QRICH1Q2TAL8 776 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 USH1GQ495M9 461 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 ASPRV1Q53RT3 343 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 CCDC62Q6P9F0 684 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 SLC17A8Q8NDX2 589 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 SYTL5Q8TDW5 730 aaPredicted RBP13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 TAAR1Q96RJ0 339 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 MAF1Q9H063 256 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 UMODL1Q5DID0 1318 aa13.82□□□□□ -0.2
CLSTN3-211ENST00000541667 EYSQ5T1H1 3165 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 A6NJR5 290 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 B4GALT4O60513 344 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 PPP1R11O60927 126 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 ARIH2O95376 493 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 CYP2C18P33260 490 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 PURAQ00577 322 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 STOX1Q6ZVD7 989 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 COPS5Q92905 334 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 RNPC3Q96LT9 517 aaKnown RBP13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 CDX2Q99626 313 aaPredicted RBP13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 CNNM2Q9H8M5 875 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 VAT1LQ9HCJ6 419 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 MAD2L2Q9UI95 211 aa13.81□□□□□ -0.2
CLSTN3-211ENST00000541667 SGSM2O43147 1006 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 ZEB2O60315 1214 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 PARP1P09874 1014 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 ACRP10323 421 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 GHRHRQ02643 423 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 ZNF365Q70YC5 407 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 MAP4K1Q92918 833 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 NOC4LQ9BVI4 516 aaKnown RBP13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 SEZ6LQ9BYH1 1024 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 PPP1R12CQ9BZL4 782 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 ABCB11O95342 1321 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 RAD50Q92878 1312 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 UNC80Q8N2C7 3258 aa13.8□□□□□ -0.2
CLSTN3-211ENST00000541667 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 TLR3O15455 904 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 PDE4DQ08499 809 aa13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 COL9A3Q14050 684 aaPredicted RBP13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 IFIT1BQ5T764 474 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 ZNF697Q5TEC3 545 aa13.79□□□□□ -0.2
CLSTN3-211ENST00000541667 FBXO11Q86XK2 927 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms