RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 WDR19Q8NEZ3 1342 aa14.14□□□□□ -0.15
CBX3P4-202ENST00000540428 A0A0D9SFI3 127 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 GRXCR1A8MXD5 290 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 SUPT20HL2P0C7V6 817 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 SNHG28P0DPA3 235 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 PDHBP11177 359 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 PTGS1P23219 599 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 CPT1AP50416 773 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 ZNF543Q08ER8 600 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 TJAP1Q5JTD0 557 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 RRP12Q5JTH9 1297 aaKnown RBP14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 TMEM63BQ5T3F8 832 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 USP38Q8NB14 1042 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 DNERQ8NFT8 737 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 CLEC4DQ8WXI8 215 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 FAM227BQ96M60 508 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 PURBQ96QR8 312 aaKnown RBP14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 WDR11Q9BZH6 1224 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 MAF1Q9H063 256 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 TRPV6Q9H1D0 765 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 WNT8AQ9H1J5 351 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 ALDH8A1Q9H2A2 487 aaPredicted RBP14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 CXXC1Q9P0U4 656 aaPredicted RBP14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 UMODL1Q5DID0 1318 aa14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 FRMPD2Q68DX3 1309 aaPredicted RBP14.13□□□□□ -0.15
CBX3P4-202ENST00000540428 EYSQ5T1H1 3165 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 PTPDC1A2A3K4 754 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 NKRFO15226 690 aaKnown RBP eCLIP14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 PFKMP08237 780 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 EDNRBP24530 442 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 CCL23P55773 120 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 PSMC6P62333 389 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 PURAQ00577 322 aaKnown RBP14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 BRDTQ58F21 947 aaPredicted RBP14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 RNF207Q6ZRF8 634 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 MFSD6Q6ZSS7 791 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 ZNF589Q86UQ0 364 aaPredicted RBP14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 RNF41Q9H4P4 317 aaPredicted RBP14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 GPCPD1Q9NPB8 672 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 CCDC171Q6TFL3 1326 aa14.12□□□□□ -0.15
CBX3P4-202ENST00000540428 B4DLN1 442 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 KPNA6O60684 536 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 MRPL12P52815 198 aaKnown RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 MFAP1P55081 439 aaKnown RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 RPS6P62753 249 aaKnown RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 NMIQ13287 307 aaPredicted RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 AAMPQ13685 434 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 GPATCH4Q5T3I0 446 aaKnown RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 SLC30A10Q6XR72 485 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 OTOP2Q7RTS6 562 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 RGS22Q8NE09 1264 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 OR6J1Q8NGC5 347 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 SCFD2Q8WU76 684 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 CRBNQ96SW2 442 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 MTG1Q9BT17 334 aaPredicted RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 PRDM12Q9H4Q4 367 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 SLC28A3Q9HAS3 691 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 GPHNQ9NQX3 736 aaPredicted RBP14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 RAD50Q92878 1312 aa14.11□□□□□ -0.15
CBX3P4-202ENST00000540428 VCANP13611 3396 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 CALML3P27482 149 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 HAND2P61296 217 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 PDE4DQ08499 809 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 PPP2R5BQ15173 497 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 DGKHQ86XP1 1220 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 ATXN2LQ8WWM7 1075 aaKnown RBP14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 ESR2Q92731 530 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 SLC4A7Q9Y6M7 1214 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 TNKSO95271 1327 aa14.1□□□□□ -0.15
CBX3P4-202ENST00000540428 PRUNE2Q8WUY3 3088 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 A6NJR5 290 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 TRIM6-TRIM34B2RNG4 842 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 MYL3P08590 195 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 PTPN11Q06124 597 aaPredicted RBP14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 ADGRE1Q14246 886 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 CCDC178Q5BJE1 867 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 NFRKBQ6P4R8 1299 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 TBC1D10CQ8IV04 446 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 VWCEQ96DN2 955 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 SCLYQ96I15 445 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 NKX2-4Q9H2Z4 354 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 PRDM6Q9NQX0 595 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 TRMT13Q9NUP7 481 aaKnown RBP14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 THEGQ9P2T0 379 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 YBX2Q9Y2T7 364 aaKnown RBP14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 PCDHA11Q9Y5I1 949 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 LCTP09848 1927 aa14.09□□□□□ -0.15
CBX3P4-202ENST00000540428 PITPNM1O00562 1244 aa14.08□□□□□ -0.16
CBX3P4-202ENST00000540428 RFC2P35250 354 aa14.08□□□□□ -0.16
CBX3P4-202ENST00000540428 ZNF213O14771 459 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 TXNP10599 105 aaKnown RBP14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 CYP2C9P11712 490 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 ATP2A2P16615 1042 aaKnown RBP14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 SDSP20132 328 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 TTLL4Q14679 1199 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 NBPF20Q3BBV1 942 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 IQCA1Q86XH1 822 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 SMC5Q8IY18 1101 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 ANKS1AQ92625 1134 aa14.07□□□□□ -0.16
CBX3P4-202ENST00000540428 RILPL2Q969X0 211 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms