RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 VHLLQ6RSH7 139 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 RCC1LQ96I51 464 aaKnown RBP6.02□□□□□ -1.45
VPS13A-213ENST00000539950 SEC16BQ96JE7 1060 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 TGIF2Q9GZN2 237 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 XYLT2Q9H1B5 865 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 RXFP1Q9HBX9 757 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 SUGT1Q9Y2Z0 365 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 BACE2Q9Y5Z0 518 aa6.02□□□□□ -1.45
VPS13A-213ENST00000539950 NCANO14594 1321 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 C2orf71A6NGG8 1288 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 PRRG2O14669 202 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 GLI4P10075 376 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 SEPHS1P49903 392 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 AMPD2Q01433 879 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 GRB10Q13322 594 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 CPNE8Q86YQ8 564 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 SYT8Q8NBV8 401 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 INPP5FQ9Y2H2 1132 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 RWDD3Q9Y3V2 267 aa6.01□□□□□ -1.45
VPS13A-213ENST00000539950 OTOL1A6NHN0 477 aaPredicted RBP6□□□□□ -1.45
VPS13A-213ENST00000539950 ATF2P15336 505 aa6□□□□□ -1.45
VPS13A-213ENST00000539950 PFKLP17858 780 aa6□□□□□ -1.45
VPS13A-213ENST00000539950 BUD31P41223 144 aaPredicted RBP6□□□□□ -1.45
VPS13A-213ENST00000539950 TP53I13Q8NBR0 393 aaPredicted RBP6□□□□□ -1.45
VPS13A-213ENST00000539950 FEZF2Q8TBJ5 459 aa6□□□□□ -1.45
VPS13A-213ENST00000539950 ANAPC16Q96DE5 110 aa6□□□□□ -1.45
VPS13A-213ENST00000539950 DBR1Q9UK59 544 aaKnown RBP6□□□□□ -1.45
VPS13A-213ENST00000539950 ANKRD34BA5PLL1 514 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 SASH1O94885 1247 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 MC3RP41968 323 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 LINC01356Q8N9X3 169 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 RELTQ969Z4 430 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 BCAS3Q9H6U6 928 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 GULP1Q9UBP9 304 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 AKT3Q9Y243 479 aa5.99□□□□□ -1.45
VPS13A-213ENST00000539950 NPHP3-ACAD11A0A0J9YXS1 232 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 FFAR3O14843 346 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 PLA2G1BP04054 148 aaKnown RBP5.98□□□□□ -1.45
VPS13A-213ENST00000539950 PAMP19021 973 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 FOXO4P98177 505 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 NFIXQ14938 502 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 TARBP2Q15633 366 aaKnown RBP5.98□□□□□ -1.45
VPS13A-213ENST00000539950 ZDHHC14Q8IZN3 488 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 LZTR1Q8N653 840 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 MTA3Q9BTC8 594 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 LGR4Q9BXB1 951 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 CCSER2Q9H7U1 834 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 STRIP2Q9ULQ0 834 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 EMC9Q9Y3B6 208 aa5.98□□□□□ -1.45
VPS13A-213ENST00000539950 FOXD2O60548 495 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-213ENST00000539950 KCNH1O95259 989 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 ASGR2P07307 311 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 ATF4P18848 351 aaPredicted RBP5.97□□□□□ -1.45
VPS13A-213ENST00000539950 SCRN1Q12765 414 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 VWA3BQ502W6 1294 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 MBLAC2Q68D91 279 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 ADGRG2Q8IZP9 1017 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 ALG3Q92685 438 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 COPS5Q92905 334 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 APBA2Q99767 749 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 RNF38Q9H0F5 515 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 GPRC5CQ9NQ84 441 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 RTEL1Q9NZ71 1219 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 CLEC1BQ9P126 229 aa5.97□□□□□ -1.45
VPS13A-213ENST00000539950 C7orf72A4D263 438 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 NCAM1P13591 858 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 PLS3P13797 630 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 PMLP29590 882 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 KRTAP5-3Q6L8H2 238 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 CABP7Q86V35 215 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 SP8Q8IXZ3 490 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 BVESQ8NE79 360 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 FNIP1Q8TF40 1166 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 LUC7LQ9NQ29 371 aaKnown RBP5.96□□□□□ -1.46
VPS13A-213ENST00000539950 MRVI1Q9Y6F6 885 aa5.96□□□□□ -1.46
VPS13A-213ENST00000539950 A0A1B0GTL3 188 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 SMAD7O15105 426 aaKnown RBP5.95□□□□□ -1.46
VPS13A-213ENST00000539950 CAP1Q01518 475 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 CYP4F3Q08477 520 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 GTF2IRD2BQ6EKJ0 949 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 GTF2IRD2Q86UP8 949 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 TRIM59Q8IWR1 403 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 NETO2Q8NC67 525 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 USP33Q8TEY7 942 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 PPP1R14AQ96A00 147 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 TSPAN17Q96FV3 270 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 MRGPRX3Q96LB0 322 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 KRTAP4-11Q9BYQ6 195 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 ADAM7Q9H2U9 754 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 FAN1Q9Y2M0 1017 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 SIT1Q9Y3P8 196 aa5.95□□□□□ -1.46
VPS13A-213ENST00000539950 TRBV23OR9-2A0A075B6M9 112 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 TBX1O43435 398 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 NPHS1O60500 1241 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 FUCA1P04066 466 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 NTRK1P04629 796 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 THBDP07204 575 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 ZNF143P52747 638 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-213ENST00000539950 HTRA3P83110 453 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 NCAPHQ15003 741 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms