RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PTGISQ16647 500 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 ST3GAL2Q16842 350 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 DUSP28Q4G0W2 176 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 OR6J1Q8NGC5 347 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 KCNG4Q8TDN1 519 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 RMDN1Q96DB5 314 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 ASIC4Q96FT7 647 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 RIPOR3Q96MK2 946 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 PIH1D3Q9NQM4 214 aaKnown RBP11.05□□□□□ -0.64
USP28-205ENST00000537706 MYH1P12882 1939 aa11.05□□□□□ -0.64
USP28-205ENST00000537706 TECTAO75443 2155 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 MAGEB6P1A0A0J9YX57 407 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 FDX1P10109 184 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 CNTN2Q02246 1040 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 DDX10Q13206 875 aaKnown RBP11.04□□□□□ -0.64
USP28-205ENST00000537706 CBX2Q14781 532 aaPredicted RBP11.04□□□□□ -0.64
USP28-205ENST00000537706 FBXO11Q86XK2 927 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 CLEC10AQ8IUN9 316 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 SIAH1Q8IUQ4 282 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 FBXO16Q8IX29 292 aaPredicted RBP11.04□□□□□ -0.64
USP28-205ENST00000537706 MYOCDQ8IZQ8 938 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 FAM133AQ8N9E0 248 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 ZNF512BQ96KM6 892 aaPredicted RBP11.04□□□□□ -0.64
USP28-205ENST00000537706 IGFLR1Q9H665 355 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 PRKRIP1Q9H875 184 aaPredicted RBP11.04□□□□□ -0.64
USP28-205ENST00000537706 RWDD3Q9Y3V2 267 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 COL11A1P12107 1806 aaPredicted RBP11.04□□□□□ -0.64
USP28-205ENST00000537706 SIP14410 1827 aa11.04□□□□□ -0.64
USP28-205ENST00000537706 ICAM3P32942 547 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 EEPD1Q7L9B9 569 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 SP7Q8TDD2 431 aaPredicted RBP11.03□□□□□ -0.64
USP28-205ENST00000537706 KIFC2Q96AC6 838 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 C11orf84Q9BUA3 381 aaPredicted RBP11.03□□□□□ -0.64
USP28-205ENST00000537706 HOMER2Q9NSB8 354 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 KMT2EQ8IZD2 1858 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 NKRFO15226 690 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP28-205ENST00000537706 RB1P06400 928 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 CHMP4BP1P59074 171 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 HTRA4P83105 476 aaPredicted RBP11.03□□□□□ -0.64
USP28-205ENST00000537706 HYAL1Q12794 435 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 PTPN21Q16825 1174 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 TKFCQ3LXA3 575 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 TAPT1Q6NXT6 567 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 PHF7Q9BWX1 381 aaPredicted RBP11.03□□□□□ -0.64
USP28-205ENST00000537706 PDGFCQ9NRA1 345 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 PTPRZ1P23471 2315 aaPredicted RBP11.03□□□□□ -0.64
USP28-205ENST00000537706 BRWD1Q9NSI6 2320 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 PLXNA3P51805 1871 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 CHD7Q9P2D1 2997 aa11.03□□□□□ -0.64
USP28-205ENST00000537706 EYA4O95677 639 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 DDRGK1Q96HY6 314 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 WDR11Q9BZH6 1224 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 SEMA4AQ9H3S1 761 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 SLC38A10Q9HBR0 1119 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 GPR108Q9NPR9 543 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 SMC4Q9NTJ3 1288 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 FEM1BQ9UK73 627 aa11.02□□□□□ -0.65
USP28-205ENST00000537706 LGR5O75473 907 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 CTNNB1P35222 781 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 DLX2Q07687 328 aaPredicted RBP11.01□□□□□ -0.65
USP28-205ENST00000537706 RPGRIP1Q96KN7 1286 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 MPHOSPH6Q99547 160 aaKnown RBP11.01□□□□□ -0.65
USP28-205ENST00000537706 SCN5AQ14524 2016 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 EMSYQ7Z589 1322 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 CACNA1BQ00975 2339 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 XIRP2A4UGR9 3374 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 TBX10O75333 385 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 GNAI3P08754 354 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 RBL2Q08999 1139 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 OS9Q13438 667 aaPredicted RBP11.01□□□□□ -0.65
USP28-205ENST00000537706 ADAM15Q13444 863 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 DYNLL2Q96FJ2 89 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 HINFPQ9BQA5 517 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 MFSD1Q9H3U5 465 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 INCENPQ9NQS7 918 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 RNF146Q9NTX7 359 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 TANC1Q9C0D5 1861 aa11.01□□□□□ -0.65
USP28-205ENST00000537706 NBNO60934 754 aa11□□□□□ -0.65
USP28-205ENST00000537706 SDHBP21912 280 aa11□□□□□ -0.65
USP28-205ENST00000537706 CDK8P49336 464 aa11□□□□□ -0.65
USP28-205ENST00000537706 UBALD2Q8IYN6 164 aa11□□□□□ -0.65
USP28-205ENST00000537706 FIBCD1Q8N539 461 aa11□□□□□ -0.65
USP28-205ENST00000537706 NUP88Q99567 741 aaPredicted RBP11□□□□□ -0.65
USP28-205ENST00000537706 DBNDD2Q9BQY9 259 aa11□□□□□ -0.65
USP28-205ENST00000537706 A1CFQ9NQ94 594 aaKnown RBP11□□□□□ -0.65
USP28-205ENST00000537706 ADD3Q9UEY8 706 aaKnown RBP11□□□□□ -0.65
USP28-205ENST00000537706 ZFHX2Q9C0A1 2572 aaPredicted RBP11□□□□□ -0.65
USP28-205ENST00000537706 CKBP12277 381 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 PTGS1P23219 599 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 RRP1P56182 461 aaKnown RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 COASYQ13057 564 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 MTX1Q13505 466 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 PPP2R5BQ15173 497 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 TNNI3KQ59H18 835 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 KIAA2013Q8IYS2 634 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 RIOK1Q9BRS2 568 aaKnown RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 DCP1AQ9NPI6 582 aaPredicted RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 ISY1Q9ULR0 285 aaKnown RBP10.99□□□□□ -0.65
USP28-205ENST00000537706 FPGT-TNNI3KV9GXZ4 949 aa10.99□□□□□ -0.65
USP28-205ENST00000537706 LOC102724159A0A0B4J2E5 919 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms