RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NASPP49321 788 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 CPLX2Q6PUV4 134 aaKnown RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 CCDC144CPQ8IYA2 1237 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 FBXO18Q8NFZ0 1043 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 TEX13BQ9BXU2 312 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 HMX1Q9NP08 348 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 NID2Q14112 1375 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 SLC25A27O95847 323 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 TFRCP02786 760 aaKnown RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 TOP1P11387 765 aaKnown RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 PCP11498 1178 aaKnown RBP13.73□□□□□ -0.21
CLIP1-208ENST00000537004 FCER1AP12319 257 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 CCDC96Q2M329 555 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 SYNE3Q6ZMZ3 975 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 UBAC1Q9BSL1 405 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 RBSNQ9H1K0 784 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 HOMER2Q9NSB8 354 aa13.73□□□□□ -0.21
CLIP1-208ENST00000537004 PARP14Q460N5 1801 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 ZBED4O75132 1171 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 NTRK3Q16288 839 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 PPP4R3BQ5MIZ7 849 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 TMTC2Q8N394 836 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 AGBL1Q96MI9 1066 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 MMP19Q99542 508 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 GPCPD1Q9NPB8 672 aa13.72□□□□□ -0.21
CLIP1-208ENST00000537004 FAM217BQ9NTX9 383 aaPredicted RBP13.72□□□□□ -0.21
CLIP1-208ENST00000537004 CTDP1Q9Y5B0 961 aaPredicted RBP13.72□□□□□ -0.21
CLIP1-208ENST00000537004 GOLGA6L4A6NEF3 574 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 LETM1O95202 739 aaPredicted RBP13.71□□□□□ -0.21
CLIP1-208ENST00000537004 PDHBP11177 359 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 PRAMEF19Q5SWL8 479 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 ATL3Q6DD88 541 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 CCDC174Q6PII3 467 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 TRPV1Q8NER1 839 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 DIS3LQ8TF46 1054 aaKnown RBP13.71□□□□□ -0.21
CLIP1-208ENST00000537004 PHKBQ93100 1093 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 CPVLQ9H3G5 476 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 PRR12Q9ULL5 1215 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 ZNF536O15090 1300 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 TNKSO95271 1327 aa13.71□□□□□ -0.21
CLIP1-208ENST00000537004 GOLGA8HP0CJ92 632 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 CEBPZQ03701 1054 aaKnown RBP13.71□□□□□ -0.22
CLIP1-208ENST00000537004 SEC23AQ15436 765 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 ABRAQ8N0Z2 381 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 ENAHQ8N8S7 591 aaPredicted RBP13.71□□□□□ -0.22
CLIP1-208ENST00000537004 RGS22Q8NE09 1264 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 CHURC1Q8WUH1 139 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 ZNF396Q96N95 335 aaPredicted RBP13.71□□□□□ -0.22
CLIP1-208ENST00000537004 ZSCAN10Q96SZ4 725 aaPredicted RBP13.71□□□□□ -0.22
CLIP1-208ENST00000537004 TSPY26PQ9H489 355 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 GJB4Q9NTQ9 266 aa13.71□□□□□ -0.22
CLIP1-208ENST00000537004 COL11A1P12107 1806 aaPredicted RBP13.71□□□□□ -0.22
CLIP1-208ENST00000537004 BAZ2BQ9UIF8 2168 aaKnown RBP13.7□□□□□ -0.22
CLIP1-208ENST00000537004 ATP2A1O14983 1001 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 IGHA2P01877 340 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 RCAN1P53805 252 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 KCTD2Q14681 263 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 MFSD14CQ5VZR4 134 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 UBE2Q1Q7Z7E8 422 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 FAM160B2Q86V87 743 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 IQCA1Q86XH1 822 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 TRMT44Q8IYL2 757 aaKnown RBP13.7□□□□□ -0.22
CLIP1-208ENST00000537004 DCAF4Q8WV16 495 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 MAML3Q96JK9 1138 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 AIFM3Q96NN9 605 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 USP28Q96RU2 1077 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 ALG1Q9BT22 464 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 CRISPLD2Q9H0B8 497 aa13.7□□□□□ -0.22
CLIP1-208ENST00000537004 RBBP6Q7Z6E9 1792 aaKnown RBP13.69□□□□□ -0.22
CLIP1-208ENST00000537004 CNGA1P29973 690 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 RTN1Q16799 776 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 ANO1Q5XXA6 986 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 LHX8Q68G74 356 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 DGKHQ86XP1 1220 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 ZNF654Q8IZM8 581 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 PGBD1Q96JS3 809 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 FTOQ9C0B1 505 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLIP1-208ENST00000537004 STK36Q9NRP7 1315 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 FARP2O94887 1054 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-208ENST00000537004 IFNAR1P17181 557 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 LIG1P18858 919 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 PNMA1Q8ND90 353 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 PAWRQ96IZ0 340 aaKnown RBP13.69□□□□□ -0.22
CLIP1-208ENST00000537004 UBA5Q9GZZ9 404 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 RCOR1Q9UKL0 485 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 SZT2Q5T011 3432 aa13.69□□□□□ -0.22
CLIP1-208ENST00000537004 PLA2G6O60733 806 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 SNHG28P0DPA3 235 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 MNX1P50219 401 aaPredicted RBP13.68□□□□□ -0.22
CLIP1-208ENST00000537004 SSRP1Q08945 709 aaKnown RBP13.68□□□□□ -0.22
CLIP1-208ENST00000537004 ZNF543Q08ER8 600 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 ZNF792Q3KQV3 632 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 OLFML2BQ68BL8 750 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 BRAPQ7Z569 592 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 FANCBQ8NB91 859 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 SLC26A6Q9BXS9 759 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 CCDC196A0A1B0GTZ2 297 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 ALAS1P13196 640 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 CYBAP13498 195 aa13.68□□□□□ -0.22
CLIP1-208ENST00000537004 SYDE2Q5VT97 1194 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms