RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 PRDM6Q9NQX0 595 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 PDGFCQ9NRA1 345 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 HOMER2Q9NSB8 354 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 CCPG1Q9ULG6 757 aa13.23□□□□□ -0.29
CLSTN3-206ENST00000535668 DYNC1LI2O43237 492 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 B4GALT4O60513 344 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 HSPD1P10809 573 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 CYP2C18P33260 490 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 RFC2P35250 354 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 CPT1AP50416 773 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 GHRHRQ02643 423 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 CTDSPL2Q05D32 466 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 ZNF543Q08ER8 600 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 BAATQ14032 418 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 GPATCH4Q5T3I0 446 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 SYDE2Q5VT97 1194 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 SESTD1Q86VW0 696 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 PHOSPHO2Q8TCD6 241 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 BCL11AQ9H165 835 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 CXXC1Q9P0U4 656 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 PCDHA11Q9Y5I1 949 aa13.22□□□□□ -0.29
CLSTN3-206ENST00000535668 RANBP6O60518 1105 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 PBX2P40425 430 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 RBL2Q08999 1139 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 CCDC178Q5BJE1 867 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 KIAA1211Q6ZU35 1233 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 SMC5Q8IY18 1101 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 USP38Q8NB14 1042 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 SCFD2Q8WU76 684 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 VTI1AQ96AJ9 217 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 GAS2L1Q99501 681 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 WDR11Q9BZH6 1224 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 INCENPQ9NQS7 918 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 MSRAQ9UJ68 235 aa13.21□□□□□ -0.29
CLSTN3-206ENST00000535668 BRWD1Q9NSI6 2320 aa13.21□□□□□ -0.3
CLSTN3-206ENST00000535668 B4DLN1 442 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 NFIBO00712 420 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 MRPL12P52815 198 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 IKQ13123 557 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 ADGRE1Q14246 886 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 TTBK2Q6IQ55 1244 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 CCDC62Q6P9F0 684 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 FBXO16Q8IX29 292 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 MPHOSPH6Q99547 160 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 MTG1Q9BT17 334 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 TRPV6Q9H1D0 765 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 RNF41Q9H4P4 317 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 XIRP2A4UGR9 3374 aa13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 PRRC2BQ5JSZ5 2229 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-206ENST00000535668 UMODL1Q5DID0 1318 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 A0A0D9SFI3 127 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 GRXCR1A8MXD5 290 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 ACRP10323 421 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 SLC4A3P48751 1232 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 MFAP1P55081 439 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 RRP1P56182 461 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 RPS6P62753 249 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 BRDTQ58F21 947 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 TMEM63BQ5T3F8 832 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 NSMFQ6X4W1 530 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 RNF207Q6ZRF8 634 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 RASGRP2Q7LDG7 609 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 SAMD3Q8N6K7 520 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 EMID1Q96A84 441 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 FAM227BQ96M60 508 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 ASB2Q96Q27 587 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 PPP1R12CQ9BZL4 782 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 SLC28A3Q9HAS3 691 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 PIEZO1Q92508 2521 aa13.19□□□□□ -0.3
CLSTN3-206ENST00000535668 TNKSO95271 1327 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 CCDC171Q6TFL3 1326 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 RAD50Q92878 1312 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 HOXD8P13378 290 aaPredicted RBP13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 ANKRD45Q5TZF3 282 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 MFSD6Q6ZSS7 791 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 NOL8Q76FK4 1167 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 ZNF589Q86UQ0 364 aaPredicted RBP13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 IWS1Q96ST2 819 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 MAP3K20Q9NYL2 800 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 YBX2Q9Y2T7 364 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 SLC4A7Q9Y6M7 1214 aa13.18□□□□□ -0.3
CLSTN3-206ENST00000535668 TNFRSF10AO00220 468 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 BAIAP3O94812 1187 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 SLC16A2P36021 539 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 ESR2Q92731 530 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 PURBQ96QR8 312 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 CTAGE1Q96RT6 745 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 SLC9A7Q96T83 725 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 PRDM12Q9H4Q4 367 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 THEGQ9P2T0 379 aa13.17□□□□□ -0.3
CLSTN3-206ENST00000535668 IQCF3P0C7M6 154 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 ATP2A2P16615 1042 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 SNAP25P60880 206 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 PSMC6P62333 389 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 MRPS5P82675 430 aaKnown RBP13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 TTLL4Q14679 1199 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 PPP2R5BQ15173 497 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 CCDC96Q2M329 555 aa13.16□□□□□ -0.3
CLSTN3-206ENST00000535668 NBPF20Q3BBV1 942 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms