RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	PBX4	Q9BYU1	374 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	CYP39A1	Q9NYL5	469 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	PRR12	Q9ULL5	1215 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	MYH4	Q9Y623	1939 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	TTC28	Q96AY4	2481 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	ORC4	O43929	436 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	ICAM1	P05362	532 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	SMPD1	P17405	629 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	BEX3	Q00994	111 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	ITGA7	Q13683	1181 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	ALX1	Q15699	326 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	CXCL17	Q6UXB2	119 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	BTNL9	Q6UXG8	535 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	TLK2	Q86UE8	772 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	AP5M1	Q9H0R1	490 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	VTA1	Q9NP79	307 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	STX8	Q9UNK0	236 aa		13.65	□□□□□ -0.22
CTNND1-238	ENST00000534647	GRIN2D	O15399	1336 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	TSPY2	A6NKD2	308 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	GPR37	O15354	613 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	DYNC1LI2	O43237	492 aa	Predicted RBP	13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	FGB	P02675	491 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	ALAS1	P13196	640 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	MX1	P20591	662 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	CYP2C18	P33260	490 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	IK	Q13123	557 aa	Predicted RBP	13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	RAB30	Q15771	203 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	MUM1L1	Q5H9M0	696 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	TJAP1	Q5JTD0	557 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	KCTD1	Q719H9	257 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	NOL8	Q76FK4	1167 aa	Known RBP	13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	EFCAB3	Q8N7B9	438 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	DCAF4	Q8WV16	495 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	PPP1R12C	Q9BZL4	782 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	MTIF3	Q9H2K0	278 aa	Known RBP	13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	HIPK3	Q9H422	1215 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	PRDM6	Q9NQX0	595 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	TCP11L1	Q9NUJ3	509 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	PCDHB15	Q9Y5E8	787 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	SALL3	Q9BXA9	1300 aa		13.64	□□□□□ -0.23
CTNND1-238	ENST00000534647	GRXCR1	A8MXD5	290 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	ACR	P10323	421 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	PBX2	P40425	430 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	AMHR2	Q16671	573 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	DUSP28	Q4G0W2	176 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	USP38	Q8NB14	1042 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	GAS2L1	Q99501	681 aa	Predicted RBP	13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	NOC4L	Q9BVI4	516 aa	Known RBP	13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	RANBP17	Q9H2T7	1088 aa	Known RBP	13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	PDGFC	Q9NRA1	345 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	PPP4R2	Q9NY27	417 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	ADD3	Q9UEY8	706 aa	Known RBP	13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	MSRA	Q9UJ68	235 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	PNMA2	Q9UL42	364 aa		13.63	□□□□□ -0.23
CTNND1-238	ENST00000534647	RBM47	A0AV96	593 aa	Known RBP	13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	NMT2	O60551	498 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	CTDSPL2	Q05D32	466 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	RPUSD2	Q8IZ73	545 aa	Known RBP	13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	EVI5L	Q96CN4	794 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	INCENP	Q9NQS7	918 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	HELLS	Q9NRZ9	838 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	CCPG1	Q9ULG6	757 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	ISY1	Q9ULR0	285 aa	Known RBP	13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	MCM3AP	O60318	1980 aa		13.62	□□□□□ -0.23
CTNND1-238	ENST00000534647	B4GALT4	O60513	344 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	RANBP6	O60518	1105 aa	Known RBP	13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	SUPT20HL2	P0C7V6	817 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	KIAA1211	Q6ZU35	1233 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	PARP9	Q8IXQ6	854 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	ZNF579	Q8NAF0	562 aa	Known RBP	13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	TTC14	Q96N46	770 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	TRPV6	Q9H1D0	765 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	PRDM12	Q9H4Q4	367 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	POLR3E	Q9NVU0	708 aa		13.61	□□□□□ -0.23
CTNND1-238	ENST00000534647	PFKM	P08237	780 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	TOP1	P11387	765 aa	Known RBP	13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	ALDH5A1	P51649	535 aa	Predicted RBP	13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	SNAP25	P60880	206 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	BAAT	Q14032	418 aa	Predicted RBP	13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	TMEM63B	Q5T3F8	832 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	VPS53	Q5VIR6	699 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	NSMF	Q6X4W1	530 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	FBXO16	Q8IX29	292 aa	Predicted RBP	13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	PRUNE2	Q8WUY3	3088 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	VWCE	Q96DN2	955 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	WDR11	Q9BZH6	1224 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	MAF1	Q9H063	256 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	WNT8A	Q9H1J5	351 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	CDH23	Q9H251	3354 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	SLC28A3	Q9HAS3	691 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	DDX49	Q9Y6V7	483 aa	Known RBP	13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	EYS	Q5T1H1	3165 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	ZMYM6	O95789	1325 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	UMODL1	Q5DID0	1318 aa		13.6	□□□□□ -0.23
CTNND1-238	ENST00000534647	NKRF	O15226	690 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CTNND1-238	ENST00000534647	FGA	P02671	866 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms