RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	TRIM56	Q9BRZ2	755 aa	Known RBP	4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	BCL2L13	Q9BXK5	485 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ATXN3L	Q9H3M9	355 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF576	Q9H609	170 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	VAV3	Q9UKW4	847 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNRF3	Q9ULT6	936 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CEP290	O15078	2479 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ADAMTSL1	Q8N6G6	1762 aa		4.04	□□□□□ -1.76
CHMP4A-208	ENST00000534106	AFDN	P55196	1824 aa	Known RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	WTIP	A6NIX2	430 aa	Predicted RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TMPRSS2	O15393	492 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CPNE3	O75131	537 aa	Known RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	RNASE1	P07998	156 aa	Known RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FUT4	P22083	530 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	CAP1	Q01518	475 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ID3	Q02535	119 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	PRKCQ	Q04759	706 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	KIAA0319	Q5VV43	1072 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SUSD4	Q5VX71	490 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	ZNF790	Q6PG37	636 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FBXO46	Q6PJ61	603 aa	Predicted RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	RASAL3	Q86YV0	1011 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SMYD4	Q8IYR2	804 aa	Predicted RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	TTC5	Q8N0Z6	440 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	HRASLS5	Q96KN8	279 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FANCD2OS	Q96PS1	177 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	GSX1	Q9H4S2	264 aa	Predicted RBP	4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	NPHS2	Q9NP85	383 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	SNED1	Q8TER0	1413 aa		4.03	□□□□□ -1.76
CHMP4A-208	ENST00000534106	FER1L6	Q2WGJ9	1857 aa		4.03	□□□□□ -1.77
CHMP4A-208	ENST00000534106	VCAN	P13611	3396 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	UNC80	Q8N2C7	3258 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	COL5A3	P25940	1745 aa	Predicted RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	NRXN2	Q9P2S2	1712 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106		H7C1D1	291 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	PSMD14	O00487	310 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	NDUFB5	O43674	189 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	HCLS1	P14317	486 aa	Predicted RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ITPKA	P23677	461 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	GPT	P24298	496 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CD96	P40200	585 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TTLL4	Q14679	1199 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	PKN2	Q16513	984 aa	Known RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	IFI16	Q16666	785 aa	Known RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CRY2	Q49AN0	593 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ANGEL2	Q5VTE6	544 aa	Known RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CLEC4G	Q6UXB4	293 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	NPM2	Q86SE8	214 aa	Known RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	GLYCTK	Q8IVS8	523 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TMEM40	Q8WWA1	233 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	RPGR	Q92834	1020 aa	Known RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	KCNB2	Q92953	911 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	DCPS	Q96C86	337 aa	Known RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CDCA5	Q96FF9	252 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	WDR89	Q96FK6	387 aa	Predicted RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	PPP4R2	Q9NY27	417 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	MIS18A	Q9NYP9	233 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CRIM1	Q9NZV1	1036 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	GPN3	Q9UHW5	284 aa	Predicted RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	PCOLCE2	Q9UKZ9	415 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	FZD1	Q9UP38	647 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TRIM17	Q9Y577	477 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	LAMA3	Q16787	3333 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ABCC12	Q96J65	1359 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	HEG1	Q9ULI3	1381 aa		4.02	□□□□□ -1.77
CHMP4A-208	ENST00000534106	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	COL11A2	P13942	1736 aa	Predicted RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TJP1	Q07157	1748 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	SYNGAP1	Q96PV0	1343 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ANKRD31	Q8N7Z5	1873 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	SCN4A	P35499	1836 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TMEM265	A0A087WTH1	108 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	LRRC10B	A6NIK2	292 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	FKTN	O75072	461 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CEACAM5	P06731	702 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ITIH2	P19823	946 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TM4SF4	P48230	202 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ORC1	Q13415	861 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	PRKG1	Q13976	671 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TNIP1	Q15025	636 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	FBLN7	Q53RD9	439 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	DPP8	Q6V1X1	898 aa	Predicted RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	DTHD1	Q6ZMT9	781 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TTLL7	Q6ZT98	887 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	MORC1	Q86VD1	984 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	LRRN4CL	Q8ND94	238 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	GLIS3	Q8NEA6	775 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	RBM17	Q96I25	401 aa	Known RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CRAMP1	Q96RY5	1269 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	TEX13A	Q9BXU3	409 aa	Predicted RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CCDC86	Q9H6F5	360 aa	Known RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	PANK3	Q9H999	370 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	DBNDD1	Q9H9R9	158 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	MBNL3	Q9NUK0	354 aa	Known RBP	4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	ATP6V0A2	Q9Y487	856 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	THSD7B	Q9C0I4	1608 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CACNA1S	Q13698	1873 aa		4.01	□□□□□ -1.77
CHMP4A-208	ENST00000534106	CARNS1	A5YM72	827 aa		4	□□□□□ -1.77
CHMP4A-208	ENST00000534106		H3BRB1	525 aa		4	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms