RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 AP3B2Q13367 1082 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 UBE2SQ16763 222 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 MYSM1Q5VVJ2 828 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 JAKMIP3Q5VZ66 844 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 USP17L6PQ6QN14 398 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 PIK3AP1Q6ZUJ8 805 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 RASGRP4Q8TDF6 673 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 MCM3APO60318 1980 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 MEIS2O14770 477 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 TRAK2O60296 914 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 ALDH1A1P00352 501 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 NCLP19338 710 aaKnown RBP16.24■□□□□ 0.19
TRIM3-212ENST00000533064 KRT85P78386 507 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 NONOQ15233 471 aaKnown RBP eCLIP16.24■□□□□ 0.19
TRIM3-212ENST00000533064 SKOR2Q2VWA4 1001 aaPredicted RBP16.24■□□□□ 0.19
TRIM3-212ENST00000533064 RILPL1Q5EBL4 403 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 MUM1L1Q5H9M0 696 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 ATL3Q6DD88 541 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 NCAPG2Q86XI2 1143 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 CCAR1Q8IX12 1150 aaKnown RBP16.24■□□□□ 0.19
TRIM3-212ENST00000533064 ANKRD13CQ8N6S4 541 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 GPRC5AQ8NFJ5 357 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 TNFRSF25Q93038 417 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 MAF1Q9H063 256 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 EHMT1Q9H9B1 1298 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 ZFYVE28Q9HCC9 887 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 RIPK3Q9Y572 518 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 NFIBO00712 420 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 OPLAHO14841 1288 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 AOC2O75106 756 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 CNMDO75829 334 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 CLK2P49760 499 aaKnown RBP16.24■□□□□ 0.19
TRIM3-212ENST00000533064 NSMFQ6X4W1 530 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 RNF207Q6ZRF8 634 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 CLEC4DQ8WXI8 215 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 MOV10L1Q9BXT6 1211 aaKnown RBP16.24■□□□□ 0.19
TRIM3-212ENST00000533064 TXNRD2Q9NNW7 524 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 CFAP45Q9UL16 551 aa16.24■□□□□ 0.19
TRIM3-212ENST00000533064 HOXA13P31271 388 aaPredicted RBP16.23■□□□□ 0.19
TRIM3-212ENST00000533064 DNM1Q05193 864 aaKnown RBP16.23■□□□□ 0.19
TRIM3-212ENST00000533064 FAM110CQ1W6H9 321 aa16.23■□□□□ 0.19
TRIM3-212ENST00000533064 FAM173BQ6P4H8 233 aa16.23■□□□□ 0.19
TRIM3-212ENST00000533064 POTEEQ6S8J3 1075 aa16.23■□□□□ 0.19
TRIM3-212ENST00000533064 FCHSD1Q86WN1 690 aa16.23■□□□□ 0.19
TRIM3-212ENST00000533064 ZIC5Q96T25 663 aa16.23■□□□□ 0.19
TRIM3-212ENST00000533064 TMEM260Q9NX78 707 aa16.23■□□□□ 0.19
TRIM3-212ENST00000533064 ADAMTS3O15072 1205 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 PEX10O60683 326 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 TRAPPC10P48553 1259 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 HSD17B4P51659 736 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 WDR78Q5VTH9 848 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 ANKRD35Q8N283 1001 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 SHCBP1Q8NEM2 672 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 ANO3Q9BYT9 981 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 MROH8Q9H579 483 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 LMBRD1Q9NUN5 540 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 MORF4L1Q9UBU8 362 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 PFASO15067 1338 aa16.22■□□□□ 0.19
TRIM3-212ENST00000533064 ERCC3P19447 782 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 ATP2B1P20020 1258 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 MAP2K2P36507 400 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 RPS6P62753 249 aaKnown RBP16.21■□□□□ 0.19
TRIM3-212ENST00000533064 GHRHRQ02643 423 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 INF2Q27J81 1249 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 Q3C1V9 767 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 EARS2Q5JPH6 523 aaKnown RBP16.21■□□□□ 0.19
TRIM3-212ENST00000533064 TBCKQ8TEA7 893 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 TBC1D5Q92609 795 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 CHAMP1Q96JM3 812 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 THSD7BQ9C0I4 1608 aa16.21■□□□□ 0.19
TRIM3-212ENST00000533064 FAM205CA6NFA0 338 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 CA12O43570 354 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 TLR2O60603 784 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 VEGFBP49765 207 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 CSPP1Q1MSJ5 1256 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 NOM1Q5C9Z4 860 aaKnown RBP16.21■□□□□ 0.18
TRIM3-212ENST00000533064 NEK8Q86SG6 692 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 PGBD1Q96JS3 809 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 SCAND2PQ9GZW5 306 aaPredicted RBP16.21■□□□□ 0.18
TRIM3-212ENST00000533064 CEP131Q9UPN4 1083 aa16.21■□□□□ 0.18
TRIM3-212ENST00000533064 PRPF40AO75400 957 aaKnown RBP16.2■□□□□ 0.18
TRIM3-212ENST00000533064 HTRA3P83110 453 aa16.2■□□□□ 0.18
TRIM3-212ENST00000533064 CEBPZQ03701 1054 aaKnown RBP16.2■□□□□ 0.18
TRIM3-212ENST00000533064 BAATQ14032 418 aaPredicted RBP16.2■□□□□ 0.18
TRIM3-212ENST00000533064 NAP1L4Q99733 375 aaKnown RBP16.2■□□□□ 0.18
TRIM3-212ENST00000533064 A1CFQ9NQ94 594 aaKnown RBP16.2■□□□□ 0.18
TRIM3-212ENST00000533064 TFIP11Q9UBB9 837 aaKnown RBP16.2■□□□□ 0.18
TRIM3-212ENST00000533064 CPA4Q9UI42 421 aa16.2■□□□□ 0.18
TRIM3-212ENST00000533064 IVNS1ABPQ9Y6Y0 642 aa16.2■□□□□ 0.18
TRIM3-212ENST00000533064 CRHR2Q13324 411 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 KCTD2Q14681 263 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 TTC38Q5R3I4 469 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 ANO1Q5XXA6 986 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 SLC30A10Q6XR72 485 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 TMEM87AQ8NBN3 555 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 SYTL5Q8TDW5 730 aaPredicted RBP16.19■□□□□ 0.18
TRIM3-212ENST00000533064 USP28Q96RU2 1077 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 POLR3EQ9NVU0 708 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 CYP39A1Q9NYL5 469 aa16.19■□□□□ 0.18
TRIM3-212ENST00000533064 CNPY2Q9Y2B0 182 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms