RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 CCDC178Q5BJE1 867 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 TMEM63BQ5T3F8 832 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 FAM126BQ8IXS8 530 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 TMEM199Q8N511 208 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 PNMA1Q8ND90 353 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 MPHOSPH6Q99547 160 aaKnown RBP20.88■□□□□ 0.93
PCF11-206ENST00000533018 WDR11Q9BZH6 1224 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 SEMA6BQ9H3T3 888 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 CTNNA3Q9UI47 895 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 SUPT16HQ9Y5B9 1047 aaKnown RBP20.88■□□□□ 0.93
PCF11-206ENST00000533018 EYSQ5T1H1 3165 aa20.88■□□□□ 0.93
PCF11-206ENST00000533018 B4E1Z4 1266 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 SNHG28P0DPA3 235 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 PPIGQ13427 754 aaKnown RBP eCLIP20.87■□□□□ 0.93
PCF11-206ENST00000533018 MORC4Q8TE76 937 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 CLEC4DQ8WXI8 215 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 DSCC1Q9BVC3 393 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 CPVLQ9H3G5 476 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 Q9Y3F1 56 aa20.87■□□□□ 0.93
PCF11-206ENST00000533018 MYH6P13533 1939 aa20.86■□□□□ 0.93
PCF11-206ENST00000533018 CSF2RAP15509 400 aa20.86■□□□□ 0.93
PCF11-206ENST00000533018 NT5C2P49902 561 aa20.86■□□□□ 0.93
PCF11-206ENST00000533018 RPS6P62753 249 aaKnown RBP20.86■□□□□ 0.93
PCF11-206ENST00000533018 PDE4DQ08499 809 aa20.86■□□□□ 0.93
PCF11-206ENST00000533018 ZSCAN10Q96SZ4 725 aaPredicted RBP20.86■□□□□ 0.93
PCF11-206ENST00000533018 CDX2Q99626 313 aaPredicted RBP20.86■□□□□ 0.93
PCF11-206ENST00000533018 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.86■□□□□ 0.933e-13■□□□□ 8.5
PCF11-206ENST00000533018 WDR19Q8NEZ3 1342 aa20.85■□□□□ 0.93
PCF11-206ENST00000533018 DHX16O60231 1041 aaKnown RBP20.85■□□□□ 0.93
PCF11-206ENST00000533018 CYP2C18P33260 490 aa20.85■□□□□ 0.93
PCF11-206ENST00000533018 PSMC6P62333 389 aa20.85■□□□□ 0.93
PCF11-206ENST00000533018 DUSP28Q4G0W2 176 aa20.85■□□□□ 0.93
PCF11-206ENST00000533018 KRT23Q9C075 422 aa20.85■□□□□ 0.93
PCF11-206ENST00000533018 ZSWIM5Q9P217 1185 aa20.85■□□□□ 0.93
PCF11-206ENST00000533018 LOC102724159A0A0B4J2E5 919 aa20.84■□□□□ 0.93
PCF11-206ENST00000533018 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 B4DLN1 442 aa20.84■□□□□ 0.93
PCF11-206ENST00000533018 CD4P01730 458 aa20.84■□□□□ 0.93
PCF11-206ENST00000533018 ACRP10323 421 aa20.84■□□□□ 0.93
PCF11-206ENST00000533018 MRPL12P52815 198 aaKnown RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 PWP2Q15269 919 aaKnown RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 CDC37Q16543 378 aaPredicted RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 UBAC1Q9BSL1 405 aa20.84■□□□□ 0.93
PCF11-206ENST00000533018 TTYH1Q9H313 450 aaPredicted RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 HIPK3Q9H422 1215 aa20.84■□□□□ 0.93
PCF11-206ENST00000533018 GPHNQ9NQX3 736 aaPredicted RBP20.84■□□□□ 0.93
PCF11-206ENST00000533018 TNKSO95271 1327 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 MYL3P08590 195 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 CPT1AP50416 773 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 BRDTQ58F21 947 aaPredicted RBP20.83■□□□□ 0.93
PCF11-206ENST00000533018 ADGRF4Q8IZF3 695 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 ENAHQ8N8S7 591 aaPredicted RBP20.83■□□□□ 0.93
PCF11-206ENST00000533018 SLC43A3Q8NBI5 491 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 OR6J1Q8NGC5 347 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 SEZ6LQ9BYH1 1024 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 TRPV6Q9H1D0 765 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 CNNM2Q9H8M5 875 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 VAT1LQ9HCJ6 419 aa20.83■□□□□ 0.93
PCF11-206ENST00000533018 CUL9Q8IWT3 2517 aa20.83■□□□□ 0.92
PCF11-206ENST00000533018 PARP1P09874 1014 aaKnown RBP20.82■□□□□ 0.92
PCF11-206ENST00000533018 PPP2R5BQ15173 497 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 TMEM240Q5SV17 173 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 ZNF365Q70YC5 407 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 C16orf59Q7L2K0 433 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 DNERQ8NFT8 737 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 MYLIPQ8WY64 445 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 POLR3EQ9NVU0 708 aa20.82■□□□□ 0.92
PCF11-206ENST00000533018 GRIN2DO15399 1336 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 RAD50Q92878 1312 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 PRUNE2Q8WUY3 3088 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 B4GALT4O60513 344 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 DNAJB2P25686 324 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 CCL23P55773 120 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 ASPRV1Q53RT3 343 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 IFIT1BQ5T764 474 aaKnown RBP20.81■□□□□ 0.92
PCF11-206ENST00000533018 PSRC1Q6PGN9 363 aaPredicted RBP20.81■□□□□ 0.92
PCF11-206ENST00000533018 ANKS1AQ92625 1134 aa20.81■□□□□ 0.92
PCF11-206ENST00000533018 ABCB11O95342 1321 aa20.8■□□□□ 0.92
PCF11-206ENST00000533018 RBM47A0AV96 593 aaKnown RBP20.8■□□□□ 0.92
PCF11-206ENST00000533018 TXNP10599 105 aaKnown RBP20.8■□□□□ 0.92
PCF11-206ENST00000533018 FOSL2P15408 326 aa20.8■□□□□ 0.92
PCF11-206ENST00000533018 IRX6P78412 446 aaPredicted RBP20.8■□□□□ 0.92
PCF11-206ENST00000533018 TTC22Q5TAA0 569 aa20.8■□□□□ 0.92
PCF11-206ENST00000533018 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.8■□□□□ 0.92
PCF11-206ENST00000533018 SCFD2Q8WU76 684 aa20.8■□□□□ 0.92
PCF11-206ENST00000533018 IL25Q9H293 177 aa20.8■□□□□ 0.92
PCF11-206ENST00000533018 IL23AQ9NPF7 189 aa20.8■□□□□ 0.92
PCF11-206ENST00000533018 UMODL1Q5DID0 1318 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 MYO9BQ13459 2157 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 TMEM265A0A087WTH1 108 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 NKRFO15226 690 aaKnown RBP eCLIP20.79■□□□□ 0.92
PCF11-206ENST00000533018 PDE4AP27815 886 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 TRDNQ13061 729 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 QRICH1Q2TAL8 776 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 FBXO11Q86XK2 927 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 MCF2L2Q86YR7 1114 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 RGS22Q8NE09 1264 aa20.79■□□□□ 0.92
PCF11-206ENST00000533018 MAFAQ8NHW3 353 aaPredicted RBP20.79■□□□□ 0.92
PCF11-206ENST00000533018 TBC1D5Q92609 795 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms